Contig 009303:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021B01Sequence711009303 (2)ref|XP_009599804.1|4e-19PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Nico688004299 (2)ref|XP_010094414.1|3e-07hypothetical protein L484_018781 [Morus notabilis] gb|EXB55995.1| hypothetical p
JMSF031L04Sequence661009303 (2)ref|XP_009599804.1|1e-11PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Nico693004299 (2)ref|XP_011089009.1|4e-07PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Sesa

Alignment

This contig is upended


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JMSF031L04+                                                                      G
JMSF021B01+                    ACAACATAGTGTCATAAGAAAGAGCAGTATGGAAAAACTCACGTCTCTTTG
                      ____________________________________________________________
consensus                      ACAACATAGTGTCATAAGAAAGAGCAGTATGGAAAAACTCACGTCTCTTTG
 
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JMSF031L04+           AAGTAAATTTGAAAAACTCCAGGACTGGCAATGGGTTCGAGTGAGAGAATCTTGCCCTTT
JMSF021B01+           AAGTAAATTTGAAAAACTCCAGGACTGGCAATGGGTTCGAGTGAGAGAATCTTGCCCTTT
                      ____________________________________________________________
consensus             AAGTAAATTTGAAAAACTCCAGGACTGGCAATGGGTTCGAGTGAGAGAATCTTGCCCTTT
 
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JMSF031L04+           TGAGTACTCCGTCAATCAATTCATTTGAGATAGAAATTTGAGATGATTTCAAGGACTGTT
JMSF021B01+           TGAGTACTCCGTCAATCAATTCATTTGAGATAGAAATTTGAGATGATTTCAAGGACTGTT
                      ____________________________________________________________
consensus             TGAGTACTCCGTCAATCAATTCATTTGAGATAGAAATTTGAGATGATTTCAAGGACTGTT
 
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JMSF031L04+           TCATGTCCTCTGGAGTTCTTGATGTAGTAACGATGCGAAAGATTACATCTACATCGTCAT
JMSF021B01+           TCATGTCCTCTGGAGTTCTTGATGTAGTAACGATGCGAAAGATTACATCTACATCGTCAT
                      ____________________________________________________________
consensus             TCATGTCCTCTGGAGTTCTTGATGTAGTAACGATGCGAAAGATTACATCTACATCGTCAT
 
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JMSF031L04+           TTTGGAGAGATGAGGGGTGAGTATGGAGGAGACGCCAAATTGCGACAGGGCAAAAATAGC
JMSF021B01+           TTTGGAGAGATGAGGGGTGAGTATGGAGGAGACGCCAAATTGCGACAGGGCAAAAATAGC
                      ____________________________________________________________
consensus             TTTGGAGAGATGAGGGGTGAGTATGGAGGAGACGCCAAATTGCGACAGGGCAAAAATAGC
 
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JMSF031L04+           TGCTTATAATTCTCCTCGTCGTAGTTGAAGAAGAAATTGAAGTGGGTTTGAGTGAGAACA
JMSF021B01+           TGCTTATAATTCTCCTCGTCGTAGTTGAAGAAGAAATTGAAGTGGGTTTGAGTGAGAACA
                      ____________________________________________________________
consensus             TGCTTATAATTCTCCTCGTCGTAGTTGAAGAAGAAATTGAAGTGGGTTTGAGTGAGAACA
 
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JMSF031L04+           TCATGTTTTTTTCAGAGATCCTAAACTGGTGAATCAAATTGGGCATTAAATCCAGTAGCA
JMSF021B01+           TCATGTTTTTTTCAGAGATCCTAAACTGGTGAATCAAATTGGGCATTAAATCCAGTAGCA
                      ____________________________________________________________
consensus             TCATGTTTTTTTCAGAGATCCTAAACTGGTGAATCAAATTGGGCATTAAATCCAGTAGCA
 
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JMSF031L04+           CTACCACTATAGTTCAAACTAGGAGATGTCATTTTGCAGTACGCAGTAGAGGCGTAGCGT
JMSF021B01+           CTACCACTATAGTTCAAACTAGGAGATGTCATTTTGCAGTACGCAGTAGAGGCGTAGCGT
                      ____________________________________________________________
consensus             CTACCACTATAGTTCAAACTAGGAGATGTCATTTTGCAGTACGCAGTAGAGGCGTAGCGT
 
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JMSF031L04+           AGAGCAGTCAGCGGTGGTCCAGCCGTCCAGTGGAGCAGACGAGCAGCAGGCAGCCGAGAG
JMSF021B01+           AGAGCAGTCAGCGGTGGTCCAGCCGTCCAGTGGAGCAGACGAGCAGCAGGCAGCCGAGAG
                      ____________________________________________________________
consensus             AGAGCAGTCAGCGGTGGTCCAGCCGTCCAGTGGAGCAGACGAGCAGCAGGCAGCCGAGAG
 
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JMSF031L04+           GAGAGTCGGTGGAGTGGAGAGCAGGCGAGCAGCAGTAGCGTAGAGCAGTCGCGGTCTCGC
JMSF021B01+           GAGAGTCGGTGGAGTGGAGAGCAGGCGAGCAGCAGTAGCGTAGAGCAGTCGCGGTCTCGC
                      ____________________________________________________________
consensus             GAGAGTCGGTGGAGTGGAGAGCAGGCGAGCAGCAGTAGCGTAGAGCAGTCGCGGTCTCGC
 
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JMSF031L04+           CTCTCGGTTTTCACGGAGCAGGGCTGGAGTGGACACTCGCTGGTCGAGGTCGAGGTTCTC
JMSF021B01+           CTCTCGGTTTTCACGGAGCAGGGCTGGAGTGGACACTCGCTGGTCGAGGTCGAGGTTCTC
                      ____________________________________________________________
consensus             CTCTCGGTTTTCACGGAGCAGGGCTGGAGTGGACACTCGCTGGTCGAGGTCGAGGTTCTC
 
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JMSF031L04+           GCCGTCGCCCGTCGGTGAGACTCGCTGGTCGCAGCCGCAGGAGTGAAACGCGAGG     
JMSF021B01+           GCCGTCGCCCGTCGGTGAGACTCGCTGGTCGCAGCCGCAGGAGTGAAACGCGAGGGAATC
                      ____________________________________________________________
consensus             GCCGTCGCCCGTCGGTGAGACTCGCTGGTCGCAGCCGCAGGAGTGAAACGCGAGGGAATC