Contig 009298:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020L24Sequence549009298 (2)ref|XP_004243320.1|1e-09PREDICTED: serine/arginine repetitive matrix protein 1-like [Solanum lycopersic771009298 (2)ref|XP_004243320.1|4e-34PREDICTED: serine/arginine repetitive matrix protein 1-like [Solanum lycopersic

Alignment

This contig is upended


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rJMSF020L24- ACAG
                      ____________________________________________________________
consensus ACAG
 
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rJMSF020L24- TAAACAGCCGAGAATTGGGATACGACAACGTGTTTGGTCTTTTGATTTGACAATTTCATA
                      ____________________________________________________________
consensus TAAACAGCCGAGAATTGGGATACGACAACGTGTTTGGTCTTTTGATTTGACAATTTCATA
 
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rJMSF020L24- GGAAAATGAAGCATTCCAAGGAAACAAGAGGGTTCTCTAGCGATTCGCCGGTCTCCTCCG
                      ____________________________________________________________
consensus GGAAAATGAAGCATTCCAAGGAAACAAGAGGGTTCTCTAGCGATTCGCCGGTCTCCTCCG
 
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rJMSF020L24- AAACGCCGTCATTAGGCTTCTCTACTTTATCTCCGCGATTCTCTGCACTTTCCGCCGCCG
                      ____________________________________________________________
consensus AAACGCCGTCATTAGGCTTCTCTACTTTATCTCCGCGATTCTCTGCACTTTCCGCCGCCG
 
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rJMSF020L24- ACAGGGCACTCTCACTCACGGCGGGGCTTTTGTTTCTTACATTACGGCGTGTATCCACCT
                      ____________________________________________________________
consensus ACAGGGCACTCTCACTCACGGCGGGGCTTTTGTTTCTTACATTACGGCGTGTATCCACCT
 
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rJMSF020L24- CCCGGTGTGTCACCGGAGAACTTGACCGCCGTGTGGGTACGGACTGTCGTTGGGCCCCGT
                      ____________________________________________________________
consensus CCCGGTGTGTCACCGGAGAACTTGACCGCCGTGTGGGTACGGACTGTCGTTGGGCCCCGT
 
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rJMSF020L24- TTTGAGGACCCACATTGCTGCGCCTCTGTGACGCCATTGGCCTAGTCTGGCCTGCTCTAG
                      ____________________________________________________________
consensus TTTGAGGACCCACATTGCTGCGCCTCTGTGACGCCATTGGCCTAGTCTGGCCTGCTCTAG
 
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rJMSF020L24- ACGATGTCAGCGGTTTCCGTTTCTCCGGAGATGGCGCCGATCTTCTCGCCGGAGATCTGA
                      ____________________________________________________________
consensus ACGATGTCAGCGGTTTCCGTTTCTCCGGAGATGGCGCCGATCTTCTCGCCGGAGATCTGA
 
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rJMSF020L24- AACTCCTGTCCCTCCCTCCAGCCAGATCCCCAGGGCTGCGCCGCTTCCTGGGCGGCCCCC
                      ____________________________________________________________
consensus AACTCCTGTCCCTCCCTCCAGCCAGATCCCCAGGGCTGCGCCGCTTCCTGGGCGGCCCCC
 
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rJMSF020L24- TGGCCGGCGACCTCTGGTTGACTTCTCCATCGTCATCCCTCCTCTCCGTCGCCGTCGTCG
JMSF020L24+ CCGTCGTCG
                      ____________________________________________________________
consensus TGGCCGGCGACCTCTGGTTGACTTCTCCATCGTCATCCCTCCTCTCCGTCGCCGTCGTCG
 
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rJMSF020L24- AAATGCTCTCGGTGAAGCTACACAATTCAGAAGGCTCAGACACAATCTCCTCAGCCACAG
JMSF020L24+ AAATGCTCTCGGTGAAGCTACACAATTCAGAAGGCTCAGACACAATCTCCTCAGCCACAG
                      ____________________________________________________________
consensus AAATGCTCTCGGTGAAGCTACACAATTCAGAAGGCTCAGACACAATCTCCTCAGCCACAG
 
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rJMSF020L24- CCGTCGGCGGCACAACCCTCCGATCCCCCCCGTCTAGGTCTAGCTCAATCTCAGCCGCCG
JMSF020L24+ CCGTCGGCGGCACAACCCTCCGATCCCCCCCGTCTAGGTCTAGCTCAATCTCAGCCGCCG
                      ____________________________________________________________
consensus CCGTCGGCGGCACAACCCTCCGATCCCCCCCGTCTAGGTCTAGCTCAATCTCAGCCGCCG
 
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rJMSF020L24- GCACTTCAATCTTACGCTGTTGAAACTCAACCACTTTCTGCTGAGCATTGCTCTTCTTCT
JMSF020L24+ GCACTTCAATCTTACGCTGTTGAAACTCAACCACTTTCTGCTGAGCATTGCTCTTCTTCT
                      ____________________________________________________________
consensus GCACTTCAATCTTACGCTGTTGAAACTCAACCACTTTCTGCTGAGCATTGCTCTTCTTCT
 
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rJMSF020L24- CATCCGCCAACACTTGCAAAGCTAGGGGCTTTGAAACGGGGGTT
JMSF020L24+ CATCCGCCAACACTTGCAAAGCTAGGGGCTTTGAAACGGGGGTTTCGGATAACACGACTT
                      ____________________________________________________________
consensus CATCCGCCAACACTTGCAAAGCTAGGGGCTTTGAAACGGGGGTTTCGGATAACACGACTT
 
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JMSF020L24+ CTTTAACAGTTTCTTCGTCCACAGGCGGTGGAGCTCTGTCATTCTTGGCAGGATCCGGTA
                      ____________________________________________________________
consensus CTTTAACAGTTTCTTCGTCCACAGGCGGTGGAGCTCTGTCATTCTTGGCAGGATCCGGTA
 
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JMSF020L24+ ATGGCGGCTGCTGCTGTTGATCTGTAGTAGAGGCTTTGGTGGTGCTTAAACAGCATCCCA
                      ____________________________________________________________
consensus ATGGCGGCTGCTGCTGTTGATCTGTAGTAGAGGCTTTGGTGGTGCTTAAACAGCATCCCA
 
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JMSF020L24+ TCTTAAGCAAATACTTATCACACTATGATAAGACTTGATCTTAAGTAAGCAGAAGAAAAA
                      ____________________________________________________________
consensus TCTTAAGCAAATACTTATCACACTATGATAAGACTTGATCTTAAGTAAGCAGAAGAAAAA
 
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JMSF020L24+ GCATGATGAATAGAAATGGTGTTTGGTTTAGGGAGTTGATGGGTTTTTAGGGTTGCAGAG
                      ____________________________________________________________
consensus GCATGATGAATAGAAATGGTGTTTGGTTTAGGGAGTTGATGGGTTTTTAGGGTTGCAGAG
 
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JMSF020L24+ AGGAGAAGAGAAGAAGGTGGTTTGGAGTAGAGAGGGAAAGTGAACGGTGAAATCCGTGCC
                      ____________________________________________________________
consensus AGGAGAAGAGAAGAAGGTGGTTTGGAGTAGAGAGGGAAAGTGAACGGTGAAATCCGTGCC