Contig 009297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C02Sequence601009297 (5)ref|XP_006347534.1|7e-68PREDICTED: stomatin-like protein 2, mitochondrial-like [Solanum tuberosum]727005581 (5)ref|XP_009629937.1|5e-56PREDICTED: stomatin-like protein 2, mitochondrial [Nicotiana tomentosiformis]
JMFF051O20Sequence623009297 (5)ref|XP_006347534.1|1e-69PREDICTED: stomatin-like protein 2, mitochondrial-like [Solanum tuberosum]488005581 (5)ref|XP_009629937.1|3e-04PREDICTED: stomatin-like protein 2, mitochondrial [Nicotiana tomentosiformis]
JMSF002O24Sequence337009297 (5)ref|XP_006347534.1|1e-14PREDICTED: stomatin-like protein 2, mitochondrial-like [Solanum tuberosum]749005581 (5)ref|XP_009629937.1|2e-71PREDICTED: stomatin-like protein 2, mitochondrial [Nicotiana tomentosiformis]
JMSF020L11Sequence720009297 (5)ref|XP_011075869.1|2e-76PREDICTED: stomatin-like protein 2, mitochondrial [Sesamum indicum] ref|XP_01107809005581 (5)ref|XP_009629937.1|3e-70PREDICTED: stomatin-like protein 2, mitochondrial [Nicotiana tomentosiformis]
JMSF029D12Sequence678009297 (5)ref|XP_006347534.1|4e-98PREDICTED: stomatin-like protein 2, mitochondrial-like [Solanum tuberosum]764005581 (5)ref|XP_009629937.1|3e-69PREDICTED: stomatin-like protein 2, mitochondrial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF029D12+                                                           AGAGTATCCCTC
                      ____________________________________________________________
consensus                                                             AGAGTATCCCTC
 
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JMSF029D12+           TCCTCAAAAGTCTTGTCCAGAGTGATCTTACCAAGCTCACTACGCATAGTTGTTTGAGCA
JMSF020L11+           TCCTCAAAAGTCTTGTCCAGAGTGATCTTACCAAGCTCACTACGCATAGTTGTTTGAGCA
                      ____________________________________________________________
consensus             TCCTCAAAAGTCTTGTCCAGAGTGATCTTACCAAGCTCACTACGCATAGTTGTTTGAGCA
 
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JMSF029D12+           AGTTGAATCACAGCATACAACGGATTCTCAACTCCATATGAAGCCAGTTTAGGATCAACT
JMFF031C02+                                                                   AACT
JMFF051O20+                                GGATTCTCAACTCCATATGAAGCCAGTTAGGATCNAACT
JMSF020L11+           AGTTGAATCACAGCATACAACGGATTCTCAACTCCATATGAAGCCAGTTTAGGATCAACT
                      ____________________________________________________________
consensus             AGTTGAATCACAGCATACAACGGATTCTCAACTCCATATGAAGCCAGTTTAGGATCAACT
 
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JMSF029D12+           ATCTTCACATAGAGAACACCGTCAATAAGAATGCTGACATTGTCCTTGGTAATAGCCGAC
JMFF031C02+           ATCTTCACATAGAGAACACCGTCAATAAGAATGCTGACATTGTCCTTGGTAATAGCCGAC
JMFF051O20+           ATCTTCACATAGAGAACACCGTCAATAAGAATGCTGACATTGTCCTTGGTAATAGCCGAC
JMSF020L11+           ATCTTCACATAGAGAACACCGTCAATAAGAATGCTGACATTGTCCTTGGTAATAGCCGAC
                      ____________________________________________________________
consensus             ATCTTCACATAGAGAACACCGTCAATAAGAATGCTGACATTGTCCTTGGTAATAGCCGAC
 
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JMSF029D12+           TGATCCGGAATGGGAATGGCCTCTTCCTTGAGGGAATGAACATACGCAATTTTGTCTACT
JMFF031C02+           TGATCCGGAATGGGAATGGCCTCTTCCTTGAGGGAATGAACATACGCAATTTTGTCTACT
JMFF051O20+           TGATCCGGAATGGGAATGGCCTCTTCCTTGAGGGAATGAACATACGCAATTTTGTCTACT
JMSF020L11+           TGATCCGGAATGGGAATGGCCTCTTCCTTGAGGGAATGAACATACGCAATTTTGTCTACT
                      ____________________________________________________________
consensus             TGATCCGGAATGGGAATGGCCTCTTCCTTGAGGGAATGAACATACGCAATTTTGTCTACT
 
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JMSF029D12+           AACGGAATCAACACGTGGATTCCAGGAGTCAATGTCTTCACATACCTCCCGAATCGCTCA
JMFF031C02+           AACGGAATCAACACGTGGATTCCAGGAGTCAATGTCTTCACATACCTCCCGAATCGCTCA
JMFF051O20+           AACGGAATCAACACGTGGATTCCAGGAGTCAATGTCTTCACATACCTCCCGAATCGCTCA
JMSF020L11+           AACGGAATCAACACGTGGATTCCAGGAGTCAATGTCTTCACATACCTCCCGAATCGCTCA
                      ____________________________________________________________
consensus             AACGGAATCAACACGTGGATTCCAGGAGTCAATGTCTTCACATACCTCCCGAATCGCTCA
 
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JMSF029D12+           ATGACGAAAGCCTTCTTCTCGGGCACAATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
JMFF031C02+           ATGACGAAAGCCTTCTTCTCGGGCACAATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
JMSF002O24+                                      ATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
JMFF051O20+           ATGACGAAAGCCTTCTTCTCGGGCACAATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
JMSF020L11+           ATGACGAAAGCCTTCTTCTCGGGCACAATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
                      ____________________________________________________________
consensus             ATGACGAAAGCCTTCTTCTCGGGCACAATCCGAACCCCCCAGTTCATAGGTGGCGGAATC
 
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JMSF029D12+           TCATAC-----CTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
JMFF031C02+           TCATAC-----CTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
JMSF002O24+           TCATAC-----CTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
JMFF051O20+           TCATAC-----CTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
JMSF020L11+           TCATACCTAAACTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
                      ____________________________________________________________
consensus             TCATAC-----CTGGAGCTAGGATCGCGAGCATTACGGAATTGGCGGACAGCGGTGTAGC
 
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JMSF029D12+           TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
JMFF031C02+           TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
JMSF002O24+           TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
JMFF051O20+           TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
JMSF020L11+           TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
                      ____________________________________________________________
consensus             TGAAGGGGGAGGGATTACGCGGCGCCGAGAGACGATTGGCGAGAACGGAAGACTGCCCAA
 
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JMSF029D12+           GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
JMFF031C02+           GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
JMSF002O24+           GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
JMFF051O20+           GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
JMSF020L11+           GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
                      ____________________________________________________________
consensus             GAATGGAAGAAGAAGCGGTAGAGATGGCTCGGGCGGCCCATGACGGCGGAACAGATTGGA
 
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JMSF029D12+           GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
JMFF031C02+           GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
JMSF002O24+           GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
JMFF051O20+           GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
JMSF020L11+           GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
                      ____________________________________________________________
consensus             GGAGGTGCCGTATCTTGCTGAGATTACTAGATTTCACGATGTTGTTCATTGCTACTTCTC
 
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JMSF029D12+           CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
JMFF031C02+           CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
JMSF002O24+           CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
JMFF051O20+           CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
JMSF020L11+           CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
                      ____________________________________________________________
consensus             CGATTCAGTTATCTGAGCTAGAAACCGAAATTAAACTCAAAAAGATCCGATTGCAGTCTG
 
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JMSF029D12+           AAGGAGCTAG                                                  
JMFF031C02+           AAGGAGCTAGAGAAGGAG-TTTTCAGTTTTCTTGATTAATAAGCCCTAGT          
JMSF002O24+           AAGGAGCT                                                    
JMFF051O20+           AAGGAGCTAGAGAAGGAG-TTTTCAGTTTTCTTGATTAATAAGCCCTAGT          
JMSF020L11+           AAGGAGCTAGAGAAGGAGTTTTTCAGTTTTCTTGATTAATAAGCCCTAGTAAAACCCATT
                      ____________________________________________________________
consensus             AAGGAGCTAGAGAAGGAG-TTTTCAGTTTTCTTGATTAATAAGCCCTAGTAAAACCCATT