Contig 009294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS066A11Sequence604009294 (2)ref|XP_002524955.1|2e-24ubiquitin-protein ligase, putative [Ricinus communis] gb|EEF37452.1| ubiquitin-p
JMSF020H02Sequence703009294 (2)ref|XP_009592895.1|1e-34PREDICTED: U-box domain-containing protein 4-like isoform X2 [Nicotiana tomento

Alignment

This contig is upended


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JMSF020H02+                            AAGAGTTCATAATCAATAGACNTGATTTCCAGCACATAGTGCT
                      ____________________________________________________________
consensus                              AAGAGTTCATAATCAATAGACNTGATTTCCAGCACATAGTGCT
 
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JMFS066A11+                                              CTATAAGAAGATATGAGTAGCTGAA
JMSF020H02+           CAAGCANCCTTAAACTTGATTCACCTGGGAGGCACCTATAAGAAGATATGAGTAGCTGAA
                      ____________________________________________________________
consensus             CAAGCANCCTTAAACTTGATTCACCTGGGAGGCACCTATAAGAAGATATGAGTAGCTGAA
 
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JMFS066A11+           GAATTTTCAGGCTGCAACTGTGAACTTNTGCAATCAGAGATTCAACTTGCAGGACAAAAT
JMSF020H02+           GAATTTTCAGGCTGCAACTTTGAACTTTTGCAATCAGAGATTCAACTTGCAGGACAAAAT
                      ____________________________________________________________
consensus             GAATTTTCAGGCTGCAACTTTGAACTTTTGCAATCAGAGATTCAACTTGCAGGACAAAAT
 
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JMFS066A11+           AAATTTTGCTGCTCCACGGTTGCCAGGTTTCAAATAGCTCAATCAGCTCATCAATTGCAC
JMSF020H02+           AAATTTTGCTGCTCCACGGTTGCCAGGTTTCAAATAGCTCAATCAGCTCATCAATTGCAC
                      ____________________________________________________________
consensus             AAATTTTGCTGCTCCACGGTTGCCAGGTTTCAAATAGCTCAATCAGCTCATCAATTGCAC
 
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JMFS066A11+           GACCCAATTCGGAAAACACATTTTGAAGCAGCCTATCAGAAGCAATTTGAGTATGAACAA
JMSF020H02+           GACCCAATTCGGAAAACACATTTTGAAGCAGCCTATCAGAAGCAATTTGAGTATGAACAA
                      ____________________________________________________________
consensus             GACCCAATTCGGAAAACACATTTTGAAGCAGCCTATCAGAAGCAATTTGAGTATGAACAA
 
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JMFS066A11+           TGCCATTGAGAATTGGCTTTAAAATCTTCAGTACATCTTCAGCCTCCCGATAATACTTAC
JMSF020H02+           TGCCATTGAGAATTGGCTTTAAAATCTTCAGTACATCTTCAGCCTCCCGATAATACTTAC
                      ____________________________________________________________
consensus             TGCCATTGAGAATTGGCTTTAAAATCTTCAGTACATCTTCAGCCTCCCGATAATACTTAC
 
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JMFS066A11+           GAACCAGTTCAGAATTTAAGTTTTCCAGTGACGATAAAAGGAAAAGGCTGTTTAACAGAG
JMSF020H02+           GAACCAGTTCAGAATTTAAGTTTTCCAGTGACGATAAAAGGAAAAGGCTGTTTAACAGAG
                      ____________________________________________________________
consensus             GAACCAGTTCAGAATTTAAGTTTTCCAGTGACGATAAAAGGAAAAGGCTGTTTAACAGAG
 
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JMFS066A11+           AAATCTCTACCCCACCTGTTACAATGCGACGCTCATGGGGTCGTCGACTCCAGGAAACAA
JMSF020H02+           AAATCTCTACCCCACCTGTTACAATGCGACGCTCATGGGGTCGTCGACTCCAGGAAACAA
                      ____________________________________________________________
consensus             AAATCTCTACCCCACCTGTTACAATGCGACGCTCATGGGGTCGTCGACTCCAGGAAACAA
 
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JMFS066A11+           ACGGGCTACGCAAAAACTTTCTCATAGAGCTGAATCCTCACCTCCGACGCTGTCCCGTGC
JMSF020H02+           ACGGGCTACGCAAAAACTTTCTCATAGAGCTGAATCCTCACCTCCGACGCTGTCCCGTGC
                      ____________________________________________________________
consensus             ACGGGCTACGCAAAAACTTTCTCATAGAGCTGAATCCTCACCTCCGACGCTGTCCCGTGC
 
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JMFS066A11+           TTCACCTCTGTGATTCCTGTGTTGAGAAAAGAGGTTAGAAATGAGCAGGTTTTCAGGAGG
JMSF020H02+           TTCACCTCTGTGATTCCTGTGTTGAGAAAAGAGGTTAGAAATGAGCAGGTTTTCAGGAGG
                      ____________________________________________________________
consensus             TTCACCTCTGTGATTCCTGTGTTGAGAAAAGAGGTTAGAAATGAGCAGGTTTTCAGGAGG
 
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JMFS066A11+           ATGAATCTTTATCCCGTAAGAGTAAGACCGCCATCAATGAAAGAGGTCGGAGCTCCAAAA
JMSF020H02+           ATGAATCTTTATCCCGTAAGAGTAAGACCGCCATAAATGAAAGAGGTCGGAGCTCCAAAA
                      ____________________________________________________________
consensus             ATGAATCTTTATCCCGTAAGAGTAAGACCGCCATCAATGAAAGAGGTCGGAGCTCCAAAA
 
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JMFS066A11+           GCACAGCATGGCGTAGCTTTCGCCTGTCACCATTGTTGG                     
JMSF020H02+           GCACAGCATGGCGTAGCTTTCGCCTGTCACCATTGTTGGTCTCCTTCCTAATTTCCTTCC
                      ____________________________________________________________
consensus             GCACAGCATGGCGTAGCTTTCGCCTGTCACCATTGTTGGTCTCCTTCCTAATTTCCTTCC