Contig 009293:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007P18Sequence565009293 (2)ref|XP_009775022.1|6e-85PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Nicotian714003954 (2)ref|XP_009775024.1|4e-75PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Nicotian
JMSF020D06Sequence590009293 (2)ref|XP_009775022.1|2e-86PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Nicotian789003954 (2)ref|XP_009775024.1|3e-93PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Nicotian

Alignment

This contig is upended


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JMFF007P18+                       GAATCATTTGTCGATTCATCACTTTTATTTCCACTAGCTGATAGATCA
JMSF020D06+                     CTGAATCATTTGTCGATTCATCACTTTTATTTCCACTAGCTGATAGATCA
                      ____________________________________________________________
consensus                       CTGAATCATTTGTCGATTCATCACTTTTATTTCCACTAGCTGATAGATCA
 
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JMFF007P18+           ACATCTTTCTTCAGACTTGCAGCTTCATCTTGAATTGAATTTAAAAGATCATTGTAATCT
JMSF020D06+           ACATCTTTCTTCAGACTTGCAGCTTCATCTTGAATTGAATTTAAAAGATCATTGTAATCT
                      ____________________________________________________________
consensus             ACATCTTTCTTCAGACTTGCAGCTTCATCTTGAATTGAATTTAAAAGATCATTGTAATCT
 
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JMFF007P18+           ATTTTTTCTTCAATAATCAACTCTGCGCTTTTGGGCTTATAAAAGATCCCGCATCCATCT
JMSF020D06+           ATTTTTTCTTCAATAATCAACTCTGCGCTTTTGGGCTTATAAAAGATCCCGCATCCATCT
                      ____________________________________________________________
consensus             ATTTTTTCTTCAATAATCAACTCTGCGCTTTTGGGCTTATAAAAGATCCCGCATCCATCT
 
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JMFF007P18+           TTCTTCTGCCCACCTCTTTGAACATAGATACTTGAGTAGCCAAAACTCTCGATATTTTTT
JMSF020D06+           TTCTTCTGCCCACCTCTTTGAACATAGATACTTGAGTAGCCAAAACTCTCGATATTTTTT
                      ____________________________________________________________
consensus             TTCTTCTGCCCACCTCTTTGAACATAGATACTTGAGTAGCCAAAACTCTCGATATTTTTT
 
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JMFF007P18+           TTGTAGAAGCTATCGTACTCATCCAGTTCCTGTAAACAAAGAAAATCTGATCCTAGGCCT
JMSF020D06+           TTGTAGAAGCTATCGTACTCATCCAGTTCCTGTAAACAAAGAAAATCTGATCCTAGGCCT
                      ____________________________________________________________
consensus             TTGTAGAAGCTATCGTACTCATCCAGTTCCTGTAAACAAAGAAAATCTGATCCTAGGCCT
 
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JMFF007P18+           TTAAGAACAGTCAAGATTGCCTGAGATCGAGCTTTCCACTTGAGACATGGTGACGGAGAG
JMSF020D06+           TTAAGAACAGTCAAGATTGCCTGAGATCGAGCTTTCCACTTGAGACATGGTGACGGAGAG
                      ____________________________________________________________
consensus             TTAAGAACAGTCAAGATTGCCTGAGATCGAGCTTTCCACTTGAGACATGGTGACGGAGAG
 
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JMFF007P18+           TGTGGAAATGAAGCACTCTTTACATAAGCCTGAGCCAAAATGTTATAAGACACAAGACTG
JMSF020D06+           TGTGGAAATGAAGCACTCTTTACATAAGCCTGAGCCAAAATGTTATAAGACACAAGACTG
                      ____________________________________________________________
consensus             TGTGGAAATGAAGCACTCTTTACATAAGCCTGAGCCAAAATGTTATAAGACACAAGACTG
 
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JMFF007P18+           AATTTGAAACCTTCAGATTTGCTTATTGAAGCAATTTCACTCTTTTCAACAGGAGTGAAC
JMSF020D06+           AATTTGAAACCTTCAGATTTGCTTATTGAAGCAATTTCACTCTTTTCAACAGGAGTGAAC
                      ____________________________________________________________
consensus             AATTTGAAACCTTCAGATTTGCTTATTGAAGCAATTTCACTCTTTTCAACAGGAGTGAAC
 
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JMFF007P18+           TTGGGACACAAAGGTTCAGGTGCTGTGCTCATTTTGCTCAAGCAAACCGTTCTATATCTG
JMSF020D06+           TTGGGACACAAAGGTTCAGGTGCTGTGCTCATTTTGCTCAAGCAAACCGTTCTATATCTG
                      ____________________________________________________________
consensus             TTGGGACACAAAGGTTCAGGTGCTGTGCTCATTTTGCTCAAGCAAACCGTTCTATATCTG
 
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JMFF007P18+           GAAGATGGACAAGCAAGTGAGAAGCGAGGAATCAAGC                       
JMSF020D06+           GAAGATGGACAAGCAAGTGAGAAGCGAGGAATCAAGCAGAAGAAAGAGCTCTTCAGCACC
                      ____________________________________________________________
consensus             GAAGATGGACAAGCAAGTGAGAAGCGAGGAATCAAGCAGAAGAAAGAGCTCTTCAGCACC