| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C22 | Sequence | 496 | 009281 (6) | gb|KDP43630.1| | 2e-75 | hypothetical protein JCGZ_16917 [Jatropha curcas] | |||||
| JMSF018J14 | Sequence | 570 | 009281 (6) | gb|KDP43630.1| | 8e-96 | hypothetical protein JCGZ_16917 [Jatropha curcas] | 774 | 009281 (6) | ref|XP_009791062.1| | 2e-108 | PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris] |
| JMSF034B23 | Sequence | 682 | 009281 (6) | gb|KDP43630.1| | 8e-125 | hypothetical protein JCGZ_16917 [Jatropha curcas] | 662 | 009281 (6) | ref|XP_009791062.1| | 8e-75 | PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris] |
| JMSF035B23 | Sequence | 672 | 012091 (9) | gb|EYU42561.1| | 3e-41 | hypothetical protein MIMGU_mgv1a002602mg [Erythranthe guttata] | 628 | 009281 (6) | ref|XP_009791062.1| | 8e-70 | PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF034B23- TCACTATGCATTCTTGT
____________________________________________________________
consensus TCACTATGCATTCTTGT
. : . : . : . : . : . :
rJMSF035B23- AGGGATCATACAAANNAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
rJMSF034B23- AAGGGATCATACAAACAAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
rJMSF018J14- AAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
____________________________________________________________
consensus AAGGGATCATACAAACAAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
. : . : . : . : . : . :
rJMSF035B23- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
rJMSF034B23- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
rJMSF018J14- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
____________________________________________________________
consensus GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
. : . : . : . : . : . :
rJMSF035B23- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
rJMSF034B23- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
rJMSF018J14- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
____________________________________________________________
consensus CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
. : . : . : . : . : . :
rJMSF035B23- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
rJMSF034B23- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
rJMSF018J14- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
____________________________________________________________
consensus AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
. : . : . : . : . : . :
rJMSF035B23- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
rJMSF034B23- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
rJMSF018J14- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAAA
____________________________________________________________
consensus TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
. : . : . : . : . : . :
rJMSF035B23- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
rJMSF034B23- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
rJMSF018J14- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
JMSF034B23+ TTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
____________________________________________________________
consensus TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
. : . : . : . : . : . :
rJMSF035B23- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
rJMSF034B23- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
rJMSF018J14- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
JMSF034B23+ CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
____________________________________________________________
consensus CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
. : . : . : . : . : . :
rJMSF035B23- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
rJMSF034B23- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
rJMSF018J14- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
JMSF034B23+ GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
JMSF018J14+ TAACCGGACTGGCATCCCTTGCTTACGCAG
____________________________________________________________
consensus GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
. : . : . : . : . : . :
rJMSF035B23- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
rJMSF034B23- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
rJMSF018J14- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
JMSF034B23+ AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
JMFF034C22+ TGTAGCTCCACCTTTTC
JMSF018J14+ AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
____________________________________________________________
consensus AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
. : . : . : . : . : . :
rJMSF035B23- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
rJMSF034B23- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
rJMSF018J14- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMSF034B23+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMFF034C22+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMSF018J14+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
____________________________________________________________
consensus TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
. : . : . : . : . : . :
rJMSF035B23- AACTTCTTCCTTTGGCAA
rJMSF034B23- AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCC
rJMSF018J14- AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMSF034B23+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMFF034C22+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMSF018J14+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
____________________________________________________________
consensus AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
. : . : . : . : . : . :
rJMSF018J14- AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMSF034B23+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMFF034C22+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMSF018J14+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
____________________________________________________________
consensus AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
. : . : . : . : . : . :
rJMSF018J14- TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMSF034B23+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMFF034C22+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMSF018J14+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
____________________________________________________________
consensus TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
. : . : . : . : . : . :
rJMSF018J14- AAATTTGAGAT
JMSF034B23+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
JMFF034C22+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
JMSF018J14+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
____________________________________________________________
consensus AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
. : . : . : . : . : . :
JMSF034B23+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
JMFF034C22+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
JMSF018J14+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
____________________________________________________________
consensus CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
. : . : . : . : . : . :
JMSF034B23+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
JMFF034C22+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
JMSF018J14+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
____________________________________________________________
consensus GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
. : . : . : . : . : . :
JMSF034B23+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACT
JMFF034C22+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGAC
JMSF018J14+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGACC
____________________________________________________________
consensus TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGACC