| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022B18 | Sequence | 506 | 009274 (5) | ref|XP_006350582.1| | 8e-31 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 737 | 011206 (4) | emb|CDP05091.1| | 1e-78 | unnamed protein product [Coffea canephora] |
| JMFF048D13 | Sequence | 381 | 009274 (5) | ref|XP_006350582.1| | 2e-18 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 369 | 011206 (4) | gb|KCW90557.1| | 2e-36 | hypothetical protein EUGRSUZ_A026652, partial [Eucalyptus grandis] gb|KCW90558.1 |
| JMFS018A11 | Sequence | 603 | 009274 (5) | ref|XP_006350582.1| | 1e-34 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | |||||
| JMSF017I17 | Sequence | 485 | 009274 (5) | ref|XP_006350582.1| | 7e-30 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 750 | 011206 (4) | ref|XP_004308009.1| | 2e-100 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Fraga |
| JMSF052M12 | Sequence | 553 | 009274 (5) | ref|XP_006350582.1| | 2e-30 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 908 | 011206 (4) | emb|CDP05091.1| | 1e-146 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS018A11+ TAATCCTCTATCAAAGACTCAATCG
____________________________________________________________
consensus TAATCCTCTATCAAAGACTCAATCG
. : . : . : . : . : . :
JMFS018A11+ CTTAGCCTCTTCTTCGGGTTCCTAATAATGTTTTCTTTCTCCGCTTCTTCATTGCCTTCT
JMSF052M12+ TTCATTGCCTTCT
____________________________________________________________
consensus CTTAGCCTCTTCTTCGGGTTCCTAATAATGTTTTCTTTCTCCGCTTCTTCATTGCCTTCT
. : . : . : . : . : . :
JMFS018A11+ CCAATCCTCTTTCTCCTTCCTCGGCCTCTCTTCACAGTACGATCTCCAGTTTCTGGACTA
JMFF022B18+ CTTCACAGTACGATCTCCAGTTTCTGGACTA
JMSF052M12+ CCAATCCTCTTTCTCCTTCCTCGGCCTCTCTTCACAGTACGATCTCCAGTTTCTGGACTA
JMSF017I17+ GACTA
____________________________________________________________
consensus CCAATCCTCTTTCTCCTTCCTCGGCCTCTCTTCACAGTACGATCTCCAGTTTCTGGACTA
. : . : . : . : . : . :
JMFS018A11+ GACTTGTACAGTTTCTCCAGTTTCGCAGCAGCTTCATTGTAATCCAATTCTATGGTGCTC
JMFF022B18+ GACTTGTACAGTTTCTCCAGTTTCGCAGCAGCTTCATTGTAATCCAATTCTATGGTGCTC
JMSF052M12+ GACTTGTACAGTTTCTCCAGTTTCGCAGCAGCTTCATTGTAATCCAATTCTATGGTGCTC
JMSF017I17+ GACTTGTACAGTTTCTCCAGTTTCGCAGCAGCTTCATTGTAATCCAATTCTATGGTGCTC
____________________________________________________________
consensus GACTTGTACAGTTTCTCCAGTTTCGCAGCAGCTTCATTGTAATCCAATTCTATGGTGCTC
. : . : . : . : . : . :
JMFS018A11+ GGGGAGGCTTCATCGGTGGAGATAACGCCACACACTCTACCTGCAGAAAGCTTCGACGAG
JMFF022B18+ GGGGAGGCTTCATCGGTGGAGATAACGCCACACACTCTACCTGCAGAAAGCTTCGACGAG
JMSF052M12+ GGGGAGGCTTCATCGGTGGAGATAACGCCACACACTCTACCTGCAGAAAGCTTCGACGAG
JMFF048D13+ ACCTGCAGAAAGCTTCGACGAG
JMSF017I17+ GGGGAGGCTTCATCGGTGGAGATAACGCCACACACTCTACCTGCAGAAAGCTTCGACGAG
____________________________________________________________
consensus GGGGAGGCTTCATCGGTGGAGATAACGCCACACACTCTACCTGCAGAAAGCTTCGACGAG
. : . : . : . : . : . :
JMFS018A11+ GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
JMFF022B18+ GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
JMSF052M12+ GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
JMFF048D13+ GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
JMSF017I17+ GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
____________________________________________________________
consensus GCTTGTCCAAGCCTCTTTTCATCGTCTTTTGAATACTGTATAAGTAAAGATTCAGATTCT
. : . : . : . : . : . :
JMFS018A11+ TTTGGAGAAACTAAGGCTGCATTTTTGGTCTTATCGGTTTTGAATGATAATATGAATGGT
JMFF022B18+ TTTGGAGAAACTAAGGCTGCATTTTTGGTCTTATCGGTTTTGAATGATAATATGAATGGT
JMSF052M12+ TTTGGAGAAACTAAGGCTGCATTTTTGGTCTNATCGGTTTTGAATGATAATATGAATGGT
JMFF048D13+ TTTGGAGAAACTAAGGCTGCATTTTTGGTCTTATCGGTTTTGAATGATAATATGAATGGT
JMSF017I17+ TTTGGAGAAACTAAGGCTGCATTTTTGGTCTTATCGGTTTTGAATGATAATATGAATGGT
____________________________________________________________
consensus TTTGGAGAAACTAAGGCTGCATTTTTGGTCTTATCGGTTTTGAATGATAATATGAATGGT
. : . : . : . : . : . :
JMFS018A11+ CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
JMFF022B18+ CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
JMSF052M12+ CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
JMFF048D13+ CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
JMSF017I17+ CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
____________________________________________________________
consensus CCTTTAAGCGGGCATAAACGAGCAGAAAATCTGTTGTTGAATCCTCTGAGACTACGCGCA
. : . : . : . : . : . :
JMFS018A11+ GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
JMFF022B18+ GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
JMSF052M12+ GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
JMFF048D13+ GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
JMSF017I17+ GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
____________________________________________________________
consensus GCAGAGCTGGAAACAGTCACAACTCCCATAGGTAGTAAGAAAAATATGCAATGAACAAAG
. : . : . : . : . : . :
JMFS018A11+ GGCTCTCTTCAACCCTAGTATGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
JMFF022B18+ GGCTCTCTTCAACCCTAGTATGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
JMSF052M12+ GGCTCTCTTCAACCCTAGTATGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
JMFF048D13+ GGCTCTCTTCAACCTTAGTACGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
JMSF017I17+ GGCTCTCTTCAACCCTAGTATGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
____________________________________________________________
consensus GGCTCTCTTCAACCCTAGTATGTCCTGAAGAAATATATCGAGGAACGACAATTCAATGTG
. : . : . : . : . : . :
JMFS018A11+ ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAA
JMFF022B18+ ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAACTTCCAGAGATTTTCAC
JMSF052M12+ ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAACTTCCAGAGATTCTCAC
JMFF048D13+ ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAACTTCCAGAGATTCTCAC
JMSF017I17+ ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAACTTCCAGAGATTCTCACATGTC
____________________________________________________________
consensus ATTCCAGCGACGGAGATTCAAGATTCCGGTGAAGTTAACTTCCAGAGATTCTCACATGTC