Contig 009272:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005C02Sequence472009272 (4)ref|XP_009604470.1|3e-09PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Nicotiana tomentosi
JMFS005G07Sequence472009272 (4)ref|XP_009604470.1|3e-09PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Nicotiana tomentosi
JMFS128H05Sequence131009272 (4)
JMSF016F06Sequence241009272 (4)ref|XP_009604470.1|5e-10PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Nicotiana tomentosi

Alignment

This contig is upended


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JMFS005G07+                                                              TCAAAATTT
JMFS005C02+                                                              TCAAAATTT
                      ____________________________________________________________
consensus                                                                TCAAAATTT
 
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JMFS005G07+           TGGCATGTTTACTATGCAATTAAGATTTAAATACCGCACAAGATACACGGAGCTTACAAC
JMFS005C02+           TGGCATGTTTACTATGCAATTAAGATTTAAATACCGCACAAGATACACGGAGCTTACAAC
                      ____________________________________________________________
consensus             TGGCATGTTTACTATGCAATTAAGATTTAAATACCGCACAAGATACACGGAGCTTACAAC
 
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JMFS005G07+           AACCTTAATCCCTAAATATCTAACTTAAAAATTATGATTTATAGATAGATATGTATATAG
JMFS005C02+           AACCTTAATCCCTAAATATCTAACTTAAAAATTATGATTTATAGATAGATATGTATATAG
                      ____________________________________________________________
consensus             AACCTTAATCCCTAAATATCTAACTTAAAAATTATGATTTATAGATAGATATGTATATAG
 
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JMFS005G07+           ATCTTTACATAGTCAAAACTATGTGCATAAAATTTCAGGAAAAACACATGTTAATCATAC
JMFS005C02+           ATCTTTACATAGTCAAAACTATGTGCATAAAATTTCAGGAAAAACACATGTTAATCATAC
                      ____________________________________________________________
consensus             ATCTTTACATAGTCAAAACTATGTGCATAAAATTTCAGGAAAAACACATGTTAATCATAC
 
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JMFS005G07+           CTGACGCGATAAAGAATCTAATCTTTGATGAGATCTAGCAAAAACAGAAGCGAAATTCGX
JMFS005C02+           CTGACGCGATAAAGAATCTAATCTTTGATGAGATCTAGCAAAAACAGAAGCGAAATNCGX
                      ____________________________________________________________
consensus             CTGACGCGATAAAGAATCTAATCTTTGATGAGATCTAGCAAAAACAGAAGCGAAATTCGN
 
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JMFS005G07+           XXXXXXXXXXXXXXXXXXXCGTAAAACTTGAAGAGATCAAAGAATTCCAAGGTCGGAACG
JMFS128H05+                              CGTAAAACTTGAAGAGATCAAAGAATTCCAAGGTCGGAACG
JMFS005C02+           XXXXXXXXXXXXXXXXXXXCGTAAAACTTGAAGAGATCAAAGAATTCCAAGGTCGGAACG
JMSF016F06+                              CGTAAAACTTGAAGAGATCAAAGAATTCCAAGGTCGGAACG
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNCGTAAAACTTGAAGAGATCAAAGAATTCCAAGGTCGGAACG
 
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JMFS005G07+           TGTTTTTACCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMFS128H05+           TGTTTTTACCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGACCGCTTCCGTGG
JMFS005C02+           TGTTTTTACCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMSF016F06+           TGTTTTTACCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
                      ____________________________________________________________
consensus             TGTTTTTACCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
 
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JMFS005G07+           TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMFS128H05+           TCGCCGGTCGAG                                                
JMFS005C02+           TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMSF016F06+           TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
                      ____________________________________________________________
consensus             TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
 
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JMFS005G07+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGA                 
JMFS005C02+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGA                 
JMSF016F06+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGCC
                      ____________________________________________________________
consensus             GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGCC