Contig 009270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033B05Sequence479009270 (5)ref|XP_004235048.1|2e-52PREDICTED: uncharacterized protein At2g39795, mitochondrial [Solanum lycopersic
JMSF015L03Sequence456009270 (5)ref|XP_009797659.1|9e-52PREDICTED: uncharacterized protein At2g39795, mitochondrial [Nicotiana sylvestr739009270 (5)ref|XP_009797659.1|9e-104PREDICTED: uncharacterized protein At2g39795, mitochondrial [Nicotiana sylvestr
JMSF033D15Sequence651009270 (5)ref|XP_009797659.1|1e-86PREDICTED: uncharacterized protein At2g39795, mitochondrial [Nicotiana sylvestr755009270 (5)ref|XP_009797659.1|3e-96PREDICTED: uncharacterized protein At2g39795, mitochondrial [Nicotiana sylvestr

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-                                                  AGACTTCCATAGCCGACAAT
                      ____________________________________________________________
consensus                                                     AGACTTCCATAGCCGACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          TTGACTCTTCTGGGCTACAATGTTACATAGAATGATAAAATTGTACCAATTTCTACCCAA
rJMSF015L03-                                               AAATTGTACCAATTTCTACCCAA
                      ____________________________________________________________
consensus             TTGACTCTTCTGGGCTACAATGTTACATAGAATGATAAAATTGTACCAATTTCTACCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          CACAAATAGTTTCCACTAATAGTATCATATCTTCCATTAAAACCAACATTAACAGTGTAT
rJMSF015L03-          CACAAATAGTTTCCACTAATAGTATCATATCTTCCATTAAAACCAACATTAACAGTGTAT
                      ____________________________________________________________
consensus             CACAAATAGTTTCCACTAATAGTATCATATCTTCCATTAAAACCAACATTAACAGTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          TGTCAGGCAAAAAACAACATAGTAAAAGCCCTCACTACACCTTCAGAAGAGGTAAGCAAA
rJMSF015L03-          TGTCAGGCAAAAAACAACATAGTAAAAGCCCTCACTACACCTTCAGAAGAGGTAAGCAAA
                      ____________________________________________________________
consensus             TGTCAGGCAAAAAACAACATAGTAAAAGCCCTCACTACACCTTCAGAAGAGGTAAGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          CATCTAACTATCTATCAATCAAGCCTCAATGAATTTCTTGAGGTTTTTAAGCCACATCAA
rJMSF015L03-          CATCTAACTATCTATCAATCAAGCCTCAATGAATTTCTTGAGGTTTTTAAGCCACATCAA
                      ____________________________________________________________
consensus             CATCTAACTATCTATCAATCAAGCCTCAATGAATTTCTTGAGGTTTTTAAGCCACATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          GTACTCCCTCCCATCCTTGTTTATCATGTACTCATGCAAAAAGTTGGTCGTGCTCGGCTT
rJMSF015L03-          GTACTCCCTCCCATCCTTGTTTATCATGTACTCATGCAAAAAGTTGGTCGTGCTCGGCTT
                      ____________________________________________________________
consensus             GTACTCCCTCCCATCCTTGTTTATCATGTACTCATGCAAAAAGTTGGTCGTGCTCGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          GATGCCCCTGATCTCGAGATACTTGTGGAAAGCTTTCTGAAGATTCTCATCCAAATCCGC
rJMSF015L03-          GATGCCCCTGATCTCGAGATACTTGTGGAAAGCTTTCTGAAGATTCTCATCCAAATCCGC
                      ____________________________________________________________
consensus             GATGCCCCTGATCTCGAGATACTTGTGGAAAGCTTTCTGAAGATTCTCATCCAAATCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          GAAATCAGGGCCTTCATATGCAATTTGTTCCTCTGCACTATTGGGATCCCTAATTGACAA
rJMSF015L03-          GAAATCAGGGCCTTCATATGCAATTTGTTCCTCTGCACTATTGGGATCCCTAATTGACAA
JMSF033D15+               TCAGGGCCTTCATATGCAATTTGTTCCTCTGCACTATTGGGATCCCTAATTGACAA
                      ____________________________________________________________
consensus             GAAATCAGGGCCTTCATATGCAATTTGTTCCTCTGCACTATTGGGATCCCTAATTGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          GCTATCTATGGAAATCTCATCAGGATAAGCAGTGCAGCCAAACTCCAGTGCAGGTCCATT
rJMSF015L03-          GCTATCTATGGAAATCTCATCAGGATAAGCAGTGCAGCCAAACTCCAGTGCAGGTCCATT
JMSF033D15+           GCTATCTATGGAAATCTCATCAGGATAAGCAGTGCAGCCAAACTCCAGTGCAGGTCCATT
                      ____________________________________________________________
consensus             GCTATCTATGGAAATCTCATCAGGATAAGCAGTGCAGCCAAACTCCAGTGCAGGTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          CTTCTTGGAAACTCTTACAACAAGAGGAATTTGGGACTCATTGCCCTGTTCGGTGTCCTC
rJMSF015L03-          CTTCTTGGAAACTCTTACAACAAGAGGAATTTGGGACTCATTGCCCTGTTCGGTGTCCTC
JMSF033D15+           CTTCTTGGAAACTCTTACAACAAGAGGAATTTGGGACTCATTGCCCTGTTCGGTGTCCTC
                      ____________________________________________________________
consensus             CTTCTTGGAAACTCTTACAACAAGAGGAATTTGGGACTCATTGCCCTGTTCGGTGTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          GTCCCCGGATGCTCCTTCCTGATTCTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
rJMSF015L03-          GTCCCCGGATGCTCCTTCCTGATTCTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
JMSF033D15+           GTCCCCGGATGCTCCTTCCTGATTCTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
JMFF033B05+           GTCCCCGGATGCTCCTTCCTGATTCTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
JMSF015L03+                                   CTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
                      ____________________________________________________________
consensus             GTCCCCGGATGCTCCTTCCTGATTCTCTTCACCAGTAACAAGGTCAGGCATGTGCACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
rJMSF015L03-          TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
JMSF033D15+           TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
JMFF033B05+           TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
JMSF015L03+           TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
                      ____________________________________________________________
consensus             TACACAGATGGTTTCACCTTGATACTCTCTTGTCAGTGTTATGGTCTGATATCCAGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
rJMSF015L03-          ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
JMSF033D15+           ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
JMFF033B05+           ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
JMSF015L03+           ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
                      ____________________________________________________________
consensus             ATCTTCAATTTTAAATGGAAAACCAGCAGGAACATCCTCAACCTTGTCAATTCCTTCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033D15-          TTCTACGGCGCATCC                                             
rJMSF015L03-          TTCTACGGCGCATCCGATCTCGGACTCGATGACTTTGAGAAGGGCCTCATCAGAT     
JMSF033D15+           TTCTACGGCGCATCCGATCTCGGACTCGATGACTTTGAGAAGGGCCTCATCAGATTTCGT
JMFF033B05+           TTCTACGGCGCATCCGATCTCGGACTCGATGACTTTGAGAAGGGCCTCATCAGATTTCGT
JMSF015L03+           TTCTACGGCGCATCCGATCTCGGACTCGATGACTTTGAGAAGGGCCTCATCAGATTTCGT
                      ____________________________________________________________
consensus             TTCTACGGCGCATCCGATCTCGGACTCGATGACTTTGAGAAGGGCCTCATCAGATTTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033D15+           GGAGAAGTGGTGTAATCCAGAAGGGACTGCGCGCCGGAAAAAGCTTCCAGAAACACCCAC
JMFF033B05+           GGAGAAGTGGTGTAATCCAGAAGGGACTGCGCGCCGGAAAAAGCTTCCAGAAACACCCAC
JMSF015L03+           GGAGAAGTGGTGTAATCCAGAAGGGACTGCGCGCCGGAAAAAGCTTCCAGAAACACCCAC
                      ____________________________________________________________
consensus             GGAGAAGTGGTGTAATCCAGAAGGGACTGCGCGCCGGAAAAAGCTTCCAGAAACACCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033D15+           GCGATTGGCGGCGGCGGAGGAGAAGAGGGAAGAAGAGCAGTGGTGGTGATACCTCTGAAC
JMFF033B05+           GCGATTGGCGGCGGCGGAGGAGAAGAGGGAAGAAGAGCAGTGGTGGTGATACCTCTGAAC
JMSF015L03+           GCGATTGGCGGCGGCGGAGGAGAAGAGGGAAGAAGAGCAGTGGTGGTGATACCTCTGAAC
                      ____________________________________________________________
consensus             GCGATTGGCGGCGGCGGAGGAGAAGAGGGAAGAAGAGCAGTGGTGGTGATACCTCTGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033D15+           TCTTCCAATGAATCGAGCGGCGACAGGCGCGATTTGCACAGCCGTTCTTCTGACGATATT
JMFF033B05+           TCTTCCAATGAATCGAGCGGCGACAGGCGCGATTTGCACAGCCGTTCTTCTGACGATATT
JMSF015L03+           TCTTCCAATGAATCGAGCGGCGACAGGCGCGATTTGCACAGCCGTTCTTCTGACGATATT
                      ____________________________________________________________
consensus             TCTTCCAATGAATCGAGCGGCGACAGGCGCGATTTGCACAGCCGTTCTTCTGACGATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033D15+           GCTGAACGCCATTTTTAGGGTTTTAGAAGAGAGATGAAACGCAGCGAAGAGTAT      
JMFF033B05+           GCTGAACGCCATTTTTAGGGTTTTAGAAGAGAGATGAAACGCAGCGAAGAGTAT      
JMSF015L03+           GCTGAACGCCATTTTTAGGGTTTTAGAAGAGAGATGAAACGCAGCGAAGAGTATAGTACC
                      ____________________________________________________________
consensus             GCTGAACGCCATTTTTAGGGTTTTAGAAGAGAGATGAAACGCAGCGAAGAGTATAGTACC