Contig 009267:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036D08Sequence531009267 (3)gb|KJB34287.1|6e-47hypothetical protein B456_006G057400 [Gossypium raimondii]754012374 (2)ref|XP_009790424.1|1e-79PREDICTED: cyclin-dependent kinase D-2-like isoform X2 [Nicotiana sylvestris]
JMFF047C11Sequence533009267 (3)ref|XP_002532521.1|9e-59cak1, putative [Ricinus communis] gb|EEF29855.1| cak1, putative [Ricinus communi395021329
JMSF015C02Sequence374009267 (3)ref|XP_004245588.1|1e-14PREDICTED: cyclin-dependent kinase D-3-like [Solanum lycopersicum]805012374 (2)ref|XP_009591212.1|6e-74PREDICTED: cyclin-dependent kinase D-3-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF015C02+                                                         CCTGCTTCCCAGGG
                      ____________________________________________________________
consensus                                                           CCTGCTTCCCAGGG
 
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JMFF036D08+                                           CTTAGTATCGATAGCTTTGAAGACCTCA
JMFF047C11+                                           CTTAGTATCGATGGCTTTGAAGACCACA
JMSF015C02+           CGAATTTTCTTAATGGCAACTACCTGTCCTGTCTTAGTATCGATAGCTTTGAAGACCTCA
                      ____________________________________________________________
consensus             CGAATTTTCTTAATGGCAACTACCTGTCCTGTCTTAGTATCGATAGCTTTGAAGACCTCA
 
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JMFF036D08+           CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
JMFF047C11+           CCATATGTACCTTCACCAAGAGTTCCGCGCTTCAGGTAACGATCCGCCACTTTC      
JMSF015C02+           CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
                      ____________________________________________________________
consensus             CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
 
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JMFF036D08+           CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
JMSF015C02+           CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
                      ____________________________________________________________
consensus             CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
 
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JMFF036D08+           CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
JMSF015C02+           CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
                      ____________________________________________________________
consensus             CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
 
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JMFF036D08+           TAGACACTCCCTTCACCGCCTGTCCCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
JMSF015C02+           TAGACACTCCCTTCACCGCCTGTCGCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
                      ____________________________________________________________
consensus             TAGACACTCCCTTCACCGCCTGTCGCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
 
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JMFF036D08+           GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAG  
JMSF015C02+           GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAGTC
                      ____________________________________________________________
consensus             GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAGTC