clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF036D08 | Sequence | 531 | 009267 (3) | gb|KJB34287.1| | 6e-47 | hypothetical protein B456_006G057400 [Gossypium raimondii] | 754 | 012374 (2) | ref|XP_009790424.1| | 1e-79 | PREDICTED: cyclin-dependent kinase D-2-like isoform X2 [Nicotiana sylvestris] |
JMFF047C11 | Sequence | 533 | 009267 (3) | ref|XP_002532521.1| | 9e-59 | cak1, putative [Ricinus communis] gb|EEF29855.1| cak1, putative [Ricinus communi | 395 | 021329 | |||
JMSF015C02 | Sequence | 374 | 009267 (3) | ref|XP_004245588.1| | 1e-14 | PREDICTED: cyclin-dependent kinase D-3-like [Solanum lycopersicum] | 805 | 012374 (2) | ref|XP_009591212.1| | 6e-74 | PREDICTED: cyclin-dependent kinase D-3-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF015C02+ CCTGCTTCCCAGGG
____________________________________________________________
consensus CCTGCTTCCCAGGG
. : . : . : . : . : . :
JMFF036D08+ CTTAGTATCGATAGCTTTGAAGACCTCA
JMFF047C11+ CTTAGTATCGATGGCTTTGAAGACCACA
JMSF015C02+ CGAATTTTCTTAATGGCAACTACCTGTCCTGTCTTAGTATCGATAGCTTTGAAGACCTCA
____________________________________________________________
consensus CGAATTTTCTTAATGGCAACTACCTGTCCTGTCTTAGTATCGATAGCTTTGAAGACCTCA
. : . : . : . : . : . :
JMFF036D08+ CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
JMFF047C11+ CCATATGTACCTTCACCAAGAGTTCCGCGCTTCAGGTAACGATCCGCCACTTTC
JMSF015C02+ CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
____________________________________________________________
consensus CCATATGTACCTTCACCAAGAGCTCCGCGCTTCAGATAACGATCCACCACTTTCCTATTA
. : . : . : . : . : . :
JMFF036D08+ CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
JMSF015C02+ CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
____________________________________________________________
consensus CTACTCTCTAGCAGTTCCGACATGACCTTGGCACAAGATATCGATAAAGGAAAGCAAACC
. : . : . : . : . : . :
JMFF036D08+ CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
JMSF015C02+ CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
____________________________________________________________
consensus CTAGTGCTGCAGAAAGAGTATTTTCTAGAGGAAAAATGATCGAAGCTGCTTTACCCGGAG
. : . : . : . : . : . :
JMFF036D08+ TAGACACTCCCTTCACCGCCTGTCCCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
JMSF015C02+ TAGACACTCCCTTCACCGCCTGTCGCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
____________________________________________________________
consensus TAGACACTCCCTTCACCGCCTGTCGCCGTCAATGCTCCCCCGACTATCGCCGTTCACCAT
. : . : . : . : . : . :
JMFF036D08+ GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAG
JMSF015C02+ GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAGTC
____________________________________________________________
consensus GCTCCAAAACCGCTTAAAGGTGAAGGAGGAGAAGAGATGATCGGTTTAAACTTCAAAGTC