| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN042D08 | Sequence | 644 | 009264 (5) | ref|XP_009588352.1| | 9e-79 | PREDICTED: psbP domain-containing protein 3, chloroplastic [Nicotiana tomentosi | |||||
| JMSF014O01 | Sequence | 381 | 009264 (5) | ref|XP_009588352.1| | 3e-06 | PREDICTED: psbP domain-containing protein 3, chloroplastic [Nicotiana tomentosi | 740 | 009264 (5) | emb|CDP07256.1| | 3e-42 | unnamed protein product [Coffea canephora] |
| JMSF047O17 | Sequence | 672 | 009264 (5) | ref|XP_009588352.1| | 4e-87 | PREDICTED: psbP domain-containing protein 3, chloroplastic [Nicotiana tomentosi | 756 | 009264 (5) | ref|XP_004253115.1| | 6e-79 | PREDICTED: psbP domain-containing protein 3, chloroplastic [Solanum lycopersicu |
This contig is upended
. : . : . : . : . : . :
rJMSF014O01- GGCATTTCTTCTTGAGAAAGAATTGGAAAGAAAATG
rJMSF047O17- TCTTCTTGAGAAAGAATTGGAAAGAAAATG
____________________________________________________________
consensus GGCATTTCTTCTTGAGAAAGAATTGGAAAGAAAATG
. : . : . : . : . : . :
rJMSF014O01- AGCCTAAATACAAAATAATACTATACTCAGCATACAGG-AGCAGATGAGAGATGTGTGCC
rJMSF047O17- AGCCTAAATACAAAATAATACTATACTCAGCATACAGGCGGCAGATGAGAGATGTGTGCC
____________________________________________________________
consensus AGCCTAAATACAAAATAATACTATACTCAGCATACAGGCGGCAGATGAGAGATGTGTGCC
. : . : . : . : . : . :
rJMSF014O01- ATTTAAACATCCAACCATTCATTCATTCTAGCTAGAACAAGTGTGTCCGCAGTAGCTAGC
rJMSF047O17- ATTTAAACATCCAACCATTCATTCATTCTAGCTAGAACAAGTGTGTCCGCAGTAGCTAGC
____________________________________________________________
consensus ATTTAAACATCCAACCATTCATTCATTCTAGCTAGAACAAGTGTGTCCGCAGTAGCTAGC
. : . : . : . : . : . :
rJMSF014O01- TTTGACCCATTATTGACAAGCACGCACCAAAATGTCAAACCAGAAGGAAGACACGCCCAC
rJMSF047O17- TTTGACCCATTATTGACAAGCACGCACCAAAATGTCAAACCAGAAGGAAGACACGCCCAC
____________________________________________________________
consensus TTTGACCCATTATTGACAAGCACGCACCAAAATGTCAAACCAGAAGGAAGACACGCCCAC
. : . : . : . : . : . :
rJMSF014O01- CATTGCCAATTACATGAACCTGAAAGACGCAACAGCCTTCTCAACTTCGGCACCATATTT
rJMSF047O17- CATTGCCAATTACATGAACCTGAAAGACGCAACAGCCTTCTCAACTTCGGCACCATATTT
____________________________________________________________
consensus CATTGCCAATTACATGAACCTGAAAGACGCAACAGCCTTCTCAACTTCGGCACCATATTT
. : . : . : . : . : . :
rJMSF014O01- CTCTGCCTCCTCCTCTACAAACTGTCCAGTAATAGTATACAACCGGTTGTAATAACCGTT
rJMSF047O17- CTCTGCCTCCTCCTCTACAAACTGTCCAGTAATAGTATACAACCGGTTGTAATAACCGTT
____________________________________________________________
consensus CTCTGCCTCCTCCTCTACAAACTGTCCAGTAATAGTATACAACCGGTTGTAATAACCGTT
. : . : . : . : . : . :
rJMSF014O01- GTTTGCTATTCCCAGCACTGTGAATAGGCGCCTGAGACTTTGTCCAGGATTTTGGAGTGT
rJMSF047O17- GTTTGCTATTCCCAGCACTGTGAATAGGCGCCTGAGACTTTGTCCAGGATTTTGGAGTGT
JMSF047O17+ TATTCCCAGCACTGTGAATAGGCGCCTGAGACTTTGTCCAGGATTTTGGAGTGT
____________________________________________________________
consensus GTTTGCTATTCCCAGCACTGTGAATAGGCGCCTGAGACTTTGTCCAGGATTTTGGAGTGT
. : . : . : . : . : . :
rJMSF014O01- GTAATCAATGTAGTACAACCCATTAGCAGATTTGCTATTTATGAGTTTTGCTGCTACTCC
rJMSF047O17- GTAATCAATGTAGTACAACCCATTAGCAGATTTGCTATTTATGAGTTTTGCTGCTACTCC
JMSF047O17+ GTAATCAATGTAGTACAACCCATTAGCAGATTTGCTATTTATGAGTTTTGCTGCTACTCC
____________________________________________________________
consensus GTAATCAATGTAGTACAACCCATTAGCAGATTTGCTATTTATGAGTTTTGCTGCTACTCC
. : . : . : . : . : . :
rJMSF014O01- TGGAGGCCGTTTCCAGCTTCGGTCCAATCCACTAACC
rJMSF047O17- TGGAGGCCGTTTCCAGCTTCGGTCCAATCCACTAACCAGATTCTCTGCAAATTCATCAAC
JMFN042D08+ ACCAGATTCTCTGCAAATTCATCAAC
JMSF047O17+ TGGAGGCCGTTTCCAGCTTCGGTCCAATCCACTAACCAGATTCTCTGCAAATTCATCAAC
____________________________________________________________
consensus TGGAGGCCGTTTCCAGCTTCGGTCCAATCCACTAACCAGATTCTCTGCAAATTCATCAAC
. : . : . : . : . : . :
rJMSF047O17- TTTTCCAAAAGATTCCAATCTGGTGAAGTCAGCACCAAGGCTTGTGATCACTATACTGAC
JMFN042D08+ TTTTCCAAAAGATTCCAATCTGGTGAAGTCAGCACCAAGGCTTGTGATCACTATACTGAC
JMSF047O17+ TTTTCCAAAAGATTCCAATCTGGTGAAGTCAGCACCAAGGCTTGTGATCACTATACTGAC
____________________________________________________________
consensus TTTTCCAAAAGATTCCAATCTGGTGAAGTCAGCACCAAGGCTTGTGATCACTATACTGAC
. : . : . : . : . : . :
rJMSF047O17- ATTTGAGTTTGAAGCTTCTTGAGGATAGAAGGCAATCAGTGACCTCACTCCATCACCTTC
JMFN042D08+ ATTTGAGTTTGAAGCTTCTTGAGGATAGAAGGCAATCAGTGACCTCACTCCATCACCTTC
JMSF047O17+ ATTTGAGTTTGAAGCTTCTTGAGGATAGAAGGCAATCAGTGACCTCACTCCATCACCTTC
____________________________________________________________
consensus ATTTGAGTTTGAAGCTTCTTGAGGATAGAAGGCAATCAGTGACCTCACTCCATCACCTTC
. : . : . : . : . : . :
rJMSF047O17- TCCAGTTCCCACCTCCCAATCGGCTGGAATGGATATCTTAAACTTGTTCACATCATCAGA
JMFN042D08+ TCCAGTTCCCACCTCCCAATCGGCTGGAATGGATATCTTAAACTTGTTCACATCATCAGA
JMSF047O17+ TCCAGTTCCCACCTCCCAATCGGCTGGAATGGATATCTTAAACTTGTTCACATCATCAGA
____________________________________________________________
consensus TCCAGTTCCCACCTCCCAATCGGCTGGAATGGATATCTTAAACTTGTTCACATCATCAGA
. : . : . : . : . : . :
rJMSF047O17- ATAAACACGAGGAGACTCCTTCAC
JMFN042D08+ ATAAACACGAGGAGACTCCTTCACTGCAACATTATCTGCAAATGCAACTGAAGGAAATGC
JMSF047O17+ ATAAACACGAGGAGACTCCTTC------ACATTATCTGCAAATGCAACTGAAGGAAATGC
JMSF014O01+ AAATGCAACTGAAGGAAATGC
____________________________________________________________
consensus ATAAACACGAGGAGACTCCTTCACTGCAACATTATCTGCAAATGCAACTGAAGGAAATGC
. : . : . : . : . : . :
JMFN042D08+ GGAAAGGGAAAATGCAACAAGGCCAGCTTGAAGCAAAAGCTCTCTCCTTTTGCTCAAAGA
JMSF047O17+ GGAAAGGGAAAATGCAACAAGGCCAGCTTGAAGCAAAAGCTCTCTCCTTTTGCTCAAAGA
JMSF014O01+ GGAAAGGGAAAATGCAACAAGGCCAGCTTGAAGCAAAAGCTCTCTCCTTTTGCTCAAAGA
____________________________________________________________
consensus GGAAAGGGAAAATGCAACAAGGCCAGCTTGAAGCAAAAGCTCTCTCCTTTTGCTCAAAGA
. : . : . : . : . : . :
JMFN042D08+ TTGCTTTCTGGTATTTCCTTCAGACCCGGGGTTGTTGCAGCAGGAAATATAGGAATTTAC
JMSF047O17+ TTGCTTTCTGGTATTTCCTTCAGACCCGGGGTTGTTGCAGCAGGAAATATAGGAATTTAC
JMSF014O01+ TTGCTTTCTGGTATTTCCTTCAGACCCGGGGTTGTTGCAGCAGGAAATATAGGAATTTAC
____________________________________________________________
consensus TTGCTTTCTGGTATTTCCTTCAGACCCGGGGTTGTTGCAGCAGGAAATATAGGAATTTAC
. : . : . : . : . : . :
JMFN042D08+ AGTGTTCTTGAGGCTTTTGGTGTGGAGACGGGTGGCAGAGCGAGAGACGGCAGTGGCAAG
JMSF047O17+ AGTGTTCTTGAGGCTTTTGGTGTGGAGACGGGTGGCAGAGCGAGAGACGGCAGTGGCAAG
JMSF014O01+ AGTGTTCTTGAGGCTTTTGGTGTGGAGACGGGTGGCAGAGCGAGAGACGGCAGTGGCAAG
____________________________________________________________
consensus AGTGTTCTTGAGGCTTTTGGTGTGGAGACGGGTGGCAGAGCGAGAGACGGCAGTGGCAAG
. : . : . : . : . : . :
JMFN042D08+ GAAGGATCCACACTGTGAATGCAGCAGAGACGATGAAAGAGAAGAAGTAGCCATTTCCCT
JMSF047O17+ GAAGGATCCACACTGTGAATGCAGCAGAGACGATGAAAGAGAAGAAGTAGCCATTTCCCT
JMSF014O01+ GAAGGATCCACACTGTGAATGCAGCAGAGACGATGAAAGAGAAGAAGTAGCCATTTCCCT
____________________________________________________________
consensus GAAGGATCCACACTGTGAATGCAGCAGAGACGATGAAAGAGAAGAAGTAGCCATTTCCCT
. : . : . : . : . : . :
JMFN042D08+ TTTTC
JMSF047O17+ TTTTCTTTTCTTTTCTCTTCTCT
JMSF014O01+ TTTTCTTTTCTTTTCTCTTCTCTAAGCTAAAATTTGTTAACCACTGCTCCATTTTATTCA
____________________________________________________________
consensus TTTTCTTTTCTTTTCTCTTCTCTAAGCTAAAATTTGTTAACCACTGCTCCATTTTATTCA
. : . : . : . : . : . :
JMSF014O01+ ATGAATTCCACCTCATTTTCAAAGAACAAAATACAAGTGGATCAGATTTAGGAAAGGCCC
____________________________________________________________
consensus ATGAATTCCACCTCATTTTCAAAGAACAAAATACAAGTGGATCAGATTTAGGAAAGGCCC