Contig 009263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E19Sequence342009263 (5)emb|CBI24890.3|6e-61unnamed protein product [Vitis vinifera]583009263 (5)emb|CBI24890.3|5e-67unnamed protein product [Vitis vinifera]
JMSF014H12Sequence501019947772009263 (5)ref|XP_004504762.1|6e-65PREDICTED: 60S ribosomal protein L44-like isoform X1 [Cicer arietinum]
JMSF014K12Sequence511009263 (5)emb|CBI24890.3|2e-67unnamed protein product [Vitis vinifera]523009263 (5)emb|CBI24890.3|2e-67unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF014H12+                                              AACGGGTTTATTAGTTTTCTCCAC
                      ____________________________________________________________
consensus                                                 AACGGGTTTATTAGTTTTCTCCAC
 
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rJMSF014H12+          TATTTAGCTAGTGATAATATTTGATGGATATGAAGTGCTGCTATGTTCTTCTACAAGTGC
                      ____________________________________________________________
consensus             TATTTAGCTAGTGATAATATTTGATGGATATGAAGTGCTGCTATGTTCTTCTACAAGTGC
 
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rJMSF014H12+          AAGAAACAGAAACTCTACAAGTTCTGCTATTGTTATCTTGAAGACTTAAATTGACCCAGG
                      ____________________________________________________________
consensus             AAGAAACAGAAACTCTACAAGTTCTGCTATTGTTATCTTGAAGACTTAAATTGACCCAGG
 
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rJMSF014H12+          GATTGCAAATTCTCCAGTCACAGTAGCACTTTTTCATACTAATATCTGGCCTATTTATTT
                      ____________________________________________________________
consensus             GATTGCAAATTCTCCAGTCACAGTAGCACTTTTTCATACTAATATCTGGCCTATTTATTT
 
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rJMSF014H12+          ACCTTCTGTCCCATTTTCTGTTTTGCACTCAGTTATTAGTTGTCTACTGTACAAAAGCCT
rJMSF014K12+                                        AGTTTGTGCAGCTCAACTTTGATACAAGTG
rJMFF004E19+                                        AGTTTGTGCAGCTCAACTTTGATACAAGTG
JMFF004E19-                                         AGTTTGTGCAGCTCAACTTTGATACAAGTG
JMSF014K12-                                         AGTTTGTGCAGCTCAACTTTGATACAAGTG
                      ____________________________________________________________
consensus             ACCTTCTGTCCCATTTTCTGTTTTGCACTCAGTTTGTGCAGCTCAACTTTGATACAAGTG
 
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rJMSF014H12+          GACCAGTTGCCTGAATCT------TACAGGTGAATGTTCCGAAAACAAAAAAGACATATT
rJMSF014K12+          TTTTTCTCACCTTCAAGTCGGCAAAAATGGTGAATGTTCCGAAAACAAAAAAGACATATT
rJMFF004E19+          TTTTTCTCACCTTCAAGTCGGCAAAAATGGTGAATGTTCCGAAAACAAAAAAGACATATT
JMFF004E19-           TTTTTCTCACCTTCAAGTCGGCAAAAATGGTGAATGTTCCGAAAACAAAAAAGACATATT
JMSF014K12-           TTTTTCTCACCTTCAAGTCGGCAAAAATGGTGAATGTTCCGAAAACAAAAAAGACATATT
                      ____________________________________________________________
consensus             TTTTTCTCACCTTCAAGTCGGCAAAAATGGTGAATGTTCCGAAAACAAAAAAGACATATT
 
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rJMSF014H12+          GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
rJMSF014K12+          GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
rJMFF004E19+          GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
JMFF004E19-           GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
JMSF014K12-           GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
                      ____________________________________________________________
consensus             GCAAATCCAAGGAGTGCAGAAAGCACACATTGCACAAGGTCACCCAATACAAGAAGGGGA
 
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rJMSF014H12+          AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
rJMSF014K12+          AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
rJMFF004E19+          AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
JMFF004E19-           AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
JMSF014K12-           AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
                      ____________________________________________________________
consensus             AAGATAGCCTTGCTGCTCAGGGGAAGCGCCGTTATGATCGCAAACAGTCAGGTTATGGAG
 
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rJMSF014H12+          GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
rJMSF014K12+          GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
rJMFF004E19+          GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
JMFF004E19-           GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
JMSF014K12-           GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
                      ____________________________________________________________
consensus             GACAGACCAAACCTGTATTCCACAAGAAAGCAAAAACAACCAAGAAGATTGTGTTGAGGT
 
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rJMSF014H12+          TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCGATCAAGAGGTGTAAGCATTTTG
rJMSF014K12+          TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCAATTAAGAGGTGTAAGCATTTTG
rJMFF004E19+          TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCGATCAAGAGGTGTAAGCATTTTG
JMFF004E19-           TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCGATCAAGAGGTGTAAGCATTTTG
JMSF014K12-           TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCAATTAAGAGGTGTAAGCATTTTG
                      ____________________________________________________________
consensus             TGCAGTGCCAAGGCTGCAAACATGTTTCACAACATGCGATCAAGAGGTGTAAGCATTTTG
 
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rJMSF014H12+          AGATTGGCGGTGACAAGAAAGGAAAGGG                                
rJMSF014K12+          AGATTGGCGGTGACAAGAAAGGAAAGGG                                
rJMFF004E19+          AGATTGGCGGTGACAAGAAAGGAAAGGG                                
JMFF004E19-           AGATTGGCGGTG                                                
JMSF014K12-           AGATTGGCGGTGACAAGAAAGGAAAGGGCACATCTCTATTTTAAGATTGACATCAGTGAA
                      ____________________________________________________________
consensus             AGATTGGCGGTGACAAGAAAGGAAAGGGCACATCTCTATTTTAAGATTGACATCAGTGAA
 
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JMSF014K12-           ATGAAATGGTATCAAATGTTTTCAAGTGTATGCCCACAAAACTATGCTTATTGGCATATT
                      ____________________________________________________________
consensus             ATGAAATGGTATCAAATGTTTTCAAGTGTATGCCCACAAAACTATGCTTATTGGCATATT
 
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JMSF014K12-           CTCCTGGATTATTTTGAAAAATGCATAGTATATATGTGTTTTGAGGTCTAAATNCTGAGT
                      ____________________________________________________________
consensus             CTCCTGGATTATTTTGAAAAATGCATAGTATATATGTGTTTTGAGGTCTAAATNCTGAGT