Contig 009261:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS146E02Sequence613009261 (5)ref|XP_002324433.1|3e-89casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase
JMSF014F07Sequence270009261 (5)738007071 (4)ref|XP_009625108.1|4e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF014H09Sequence595009261 (5)ref|XP_002324433.1|1e-71casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 737007071 (4)ref|XP_009625108.1|7e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF020L16Sequence621009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 426007071 (4)
JMSF052E24Sequence616009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 875007071 (4)ref|XP_006353475.1|4e-32PREDICTED: casein kinase I isoform delta-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS146E02+ CTTTTCGACCAAGGCCCATAAGAA
                      ____________________________________________________________
consensus CTTTTCGACCAAGGCCCATAAGAA
 
. : . : . : . : . : . :
JMFS146E02+ AATTATCCGGTTTAATATCTCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
JMSF052E24+ TCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
JMSF014H09+ GACGTACTCAATCCTAG
JMSF020L16+ TCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
                      ____________________________________________________________
consensus AATTATCCGGTTTAATATCTCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
 
. : . : . : . : . : . :
JMFS146E02+ TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF052E24+ TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF014H09+ TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF020L16+ TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
                      ____________________________________________________________
consensus TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
 
. : . : . : . : . : . :
JMFS146E02+ CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
JMSF052E24+ CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
JMSF014H09+ CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGCACAAGAGCGTTGTCTTCTCCAT
JMSF020L16+ CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
                      ____________________________________________________________
consensus CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
 
. : . : . : . : . : . :
JMFS146E02+ CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF052E24+ CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF014H09+ CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF020L16+ CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
                      ____________________________________________________________
consensus CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
 
. : . : . : . : . : . :
JMFS146E02+ TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF052E24+ TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF014H09+ TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF020L16+ TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
                      ____________________________________________________________
consensus TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
 
. : . : . : . : . : . :
JMFS146E02+ TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF052E24+ TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF014H09+ TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF020L16+ TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
                      ____________________________________________________________
consensus TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
 
. : . : . : . : . : . :
JMFS146E02+ TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF052E24+ TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF014H09+ TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF020L16+ TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF014F07+ TCCTCTCCATGCTTCAGATCGACGGATCAG
                      ____________________________________________________________
consensus TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
 
. : . : . : . : . : . :
JMFS146E02+ ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF052E24+ ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF014H09+ ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF020L16+ ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF014F07+ ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
                      ____________________________________________________________
consensus ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
 
. : . : . : . : . : . :
JMFS146E02+ CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF052E24+ CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF014H09+ CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF020L16+ CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF014F07+ CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
                      ____________________________________________________________
consensus CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
 
. : . : . : . : . : . :
JMFS146E02+ TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCA
JMSF052E24+ TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF014H09+ TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF020L16+ TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF014F07+ TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
                      ____________________________________________________________
consensus TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
 
. : . : . : . : . : . :
JMSF052E24+ TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC
JMSF014H09+ TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC
JMSF020L16+ TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC
JMSF014F07+ TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCCGCCGTTGCGAGAGAGAGAGAGAGGGC
                      ____________________________________________________________
consensus TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCCGCCGTTGCGAGAGAGAGAGAGAGGGC