Contig 009261:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS146E02Sequence613009261 (5)ref|XP_002324433.1|3e-89casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase
JMSF014F07Sequence270009261 (5)738007071 (4)ref|XP_009625108.1|4e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF014H09Sequence595009261 (5)ref|XP_002324433.1|1e-71casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 737007071 (4)ref|XP_009625108.1|7e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF020L16Sequence621009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 426007071 (4)
JMSF052E24Sequence616009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 875007071 (4)ref|XP_006353475.1|4e-32PREDICTED: casein kinase I isoform delta-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS146E02+                                               CTTTTCGACCAAGGCCCATAAGAA
                      ____________________________________________________________
consensus                                                 CTTTTCGACCAAGGCCCATAAGAA
 
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JMFS146E02+           AATTATCCGGTTTAATATCTCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
JMSF052E24+                              TCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
JMSF014H09+                                                      GACGTACTCAATCCTAG
JMSF020L16+                              TCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
                      ____________________________________________________________
consensus             AATTATCCGGTTTAATATCTCTATGTAAAAACCCTTTAGAGTGGACGTACTCAATCCTAG
 
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JMFS146E02+           TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF052E24+           TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF014H09+           TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
JMSF020L16+           TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
                      ____________________________________________________________
consensus             TCATCATCTGATCAGCCAACATTAAGACAGTCTTCAATGAAAACTTTCTACCACAATATA
 
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JMFS146E02+           CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
JMSF052E24+           CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
JMSF014H09+           CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGCACAAGAGCGTTGTCTTCTCCAT
JMSF020L16+           CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
                      ____________________________________________________________
consensus             CAAAGAGATCCTCTAGACTTGGACCCAGCAAATCAAGGACAAGAGCGTTGTCTTCTCCAT
 
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JMFS146E02+           CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF052E24+           CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF014H09+           CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
JMSF020L16+           CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
                      ____________________________________________________________
consensus             CCACTCCAGACCATTTTATATGGGGAATACCACTTCCTCCCTGGAGAATATTGTATAACT
 
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JMFS146E02+           TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF052E24+           TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF014H09+           TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
JMSF020L16+           TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
                      ____________________________________________________________
consensus             TGGCCTCGTAAAGAAGTTGAGGATGCTTAGTCTTGTTATTCTCAATTTTGACGGCTACAA
 
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JMFS146E02+           TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF052E24+           TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF014H09+           TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
JMSF020L16+           TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
                      ____________________________________________________________
consensus             TCTCGAACGTATCGATATGCTTTGCAAGGAAAATTTCGCCAAACGATCCACTTCCGATCT
 
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JMFS146E02+           TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF052E24+           TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF014H09+           TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF020L16+           TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
JMSF014F07+                                         TCCTCTCCATGCTTCAGATCGACGGATCAG
                      ____________________________________________________________
consensus             TACGGCCGAGCTTGTATTTACCTCCAACTATCCTCTCCATGCTTCAGATCGACGGATCAG
 
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JMFS146E02+           ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF052E24+           ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF014H09+           ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF020L16+           ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
JMSF014F07+           ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
                      ____________________________________________________________
consensus             ACAGACTTTAGCTCAGATCACGCAAAAACAAAAAGCGGAGTTTTTGACGTTGTGAGCTGC
 
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JMFS146E02+           CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF052E24+           CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF014H09+           CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF020L16+           CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
JMSF014F07+           CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
                      ____________________________________________________________
consensus             CGAATCCGAGACGGAAAAAAGCAGTATATGTTTCCCCAGAAAATTGTCTAGAAAATCAGG
 
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JMFS146E02+           TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCA           
JMSF052E24+           TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF014H09+           TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF020L16+           TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
JMSF014F07+           TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
                      ____________________________________________________________
consensus             TGGGAAAAAGTAGAACACGAGGATTTCAGGGGGGGAGAAGAGAGTGTCAGAAGTATGAAC
 
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JMSF052E24+           TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC                          
JMSF014H09+           TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC                          
JMSF020L16+           TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCC                          
JMSF014F07+           TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCCGCCGTTGCGAGAGAGAGAGAGAGGGC
                      ____________________________________________________________
consensus             TGTGCTGTCGAAGACTTGGGAGAACAGCCCGTCCGCCGTTGCGAGAGAGAGAGAGAGGGC