Contig 009260:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C17Sequence481009260 (2)ref|XP_004238206.1|117PREDICTED: uncharacterized protein LOC101244367 [Solanum lycopersicum]788009260 (2)ref|XP_009616016.1|1e-107PREDICTED: uncharacterized protein LOC104108641 isoform X1 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF014C17-                                    AAGGAAACTGCATCTTCTGCAAATGCTAATAGTT
                      ____________________________________________________________
consensus                                       AAGGAAACTGCATCTTCTGCAAATGCTAATAGTT
 
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rJMSF014C17-          CTCAGCAACAGGCCTAGAAGGAAAGAGTCTTTGAAGAAAGGTTAACAAAGACCAAAGGCA
                      ____________________________________________________________
consensus             CTCAGCAACAGGCCTAGAAGGAAAGAGTCTTTGAAGAAAGGTTAACAAAGACCAAAGGCA
 
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rJMSF014C17-          AACCACACCTAAGACTTGGAAACTCATTATCTGCGAAAACAATGCTGCAGTTCTTTGAAT
                      ____________________________________________________________
consensus             AACCACACCTAAGACTTGGAAACTCATTATCTGCGAAAACAATGCTGCAGTTCTTTGAAT
 
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rJMSF014C17-          GAACTCATCTGTCACATTAGGAAGCGTTCTCGTGGCTAACACTAAATCCTGAGCAAAGCT
                      ____________________________________________________________
consensus             GAACTCATCTGTCACATTAGGAAGCGTTCTCGTGGCTAACACTAAATCCTGAGCAAAGCT
 
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rJMSF014C17-          CATGCCTCTGCTCAACTGGTAGAGCCTATAAACCTCGAAAATAATTGGGACTAGAGGCCA
                      ____________________________________________________________
consensus             CATGCCTCTGCTCAACTGGTAGAGCCTATAAACCTCGAAAATAATTGGGACTAGAGGCCA
 
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rJMSF014C17-          ACAAGACGATTTATGTTGTCCAAGATACCTCTCGAATGCATACTGAACAAGACAACCAAC
                      ____________________________________________________________
consensus             ACAAGACGATTTATGTTGTCCAAGATACCTCTCGAATGCATACTGAACAAGACAACCAAC
 
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rJMSF014C17-          TAAGAAAGGCGTTATTCCAACCAAGGCTGTTGTACCAAGCACCGGCCAGGTGACAAGAAG
                      ____________________________________________________________
consensus             TAAGAAAGGCGTTATTCCAACCAAGGCTGTTGTACCAAGCACCGGCCAGGTGACAAGAAG
 
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rJMSF014C17-          CACAATAAGCGGGAGAGCTATCTTAATGCCCATTACAACGAAGGCCGAAGGTAGATAACC
                      ____________________________________________________________
consensus             CACAATAAGCGGGAGAGCTATCTTAATGCCCATTACAACGAAGGCCGAAGGTAGATAACC
 
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rJMSF014C17-          TGGAAGGCCAGTTATCAGGCTCCACCTCTTTGCACTAAACTCCAGATATGGCTTCTGAAC
                      ____________________________________________________________
consensus             TGGAAGGCCAGTTATCAGGCTCCACCTCTTTGCACTAAACTCCAGATATGGCTTCTGAAC
 
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rJMSF014C17-          TTGGTCAGTTACAGAAAGAAATACCCCTAATCCGATGTAGAACATAACGTCTGAGATCAA
                      ____________________________________________________________
consensus             TTGGTCAGTTACAGAAAGAAATACCCCTAATCCGATGTAGAACATAACGTCTGAGATCAA
 
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rJMSF014C17-          TGAAGCCAAAATTTCTGAGAAAACCTCATTCTTGATGCCATCAACAGCAAAATAAACAAG
JMSF014C17+                                                                      G
                      ____________________________________________________________
consensus             TGAAGCCAAAATTTCTGAGAAAACCTCATTCTTGATGCCATCAACAGCAAAATAAACAAG
 
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rJMSF014C17-          AAATGGGGGAAGCAAAAACGACGAGATTAGTGCAACAGGGGCAACAACCCACAGAAAAGA
JMSF014C17+           AAATGGGGGAAGCAAAAACGACGAGATTAGTGCAACAGGGGCAACAACCCACAGAAAAGA
                      ____________________________________________________________
consensus             AAATGGGGGAAGCAAAAACGACGAGATTAGTGCAACAGGGGCAACAACCCACAGAAAAGA
 
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rJMSF014C17-          TTGAGCTTCTTCCCCAGAAGGAGCAGACTCCAATTTTCTTTCTTCCACCAATTGGTGAGT
JMSF014C17+           TTGAGCTTCTTCCCCAGAAGGAGCAGACTCCAATTTTCTTTCTTCCACCAATTGGTGAGT
                      ____________________________________________________________
consensus             TTGAGCTTCTTCCCCAGAAGGAGCAGACTCCAATTTTCTTTCTTCCACCAATTGGTGAGT
 
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rJMSF014C17-          CAGCCCAGCAAAAGAANCACAACCTGTTTTACCC                          
JMSF014C17+           CAGCCCAGCAAAAGAAACACAACCTGTTTTACCCTGAAATGGTTCCCACCCACTAATGCC
                      ____________________________________________________________
consensus             CAGCCCAGCAAAAGAAACACAACCTGTTTTACCCTGAAATGGTTCCCACCCACTAATGCC
 
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JMSF014C17+           ATTAGCAGCCACACTTCTATTTTCTGTTTCAGAGGAACTCAACTTCACAGATGAGCTTGA
                      ____________________________________________________________
consensus             ATTAGCAGCCACACTTCTATTTTCTGTTTCAGAGGAACTCAACTTCACAGATGAGCTTGA
 
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JMSF014C17+           GTTAGACAGGCATACTATTGCCCCATTCCTTGGCCAAGAATTCAATTTCAACTCATACCG
                      ____________________________________________________________
consensus             GTTAGACAGGCATACTATTGCCCCATTCCTTGGCCAAGAATTCAATTTCAACTCATACCG
 
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JMSF014C17+           GAGCAGAGGGGTTTGCTTCCTCAGTCTTACGTGGCTCTTAGACTGTTTCCCTAATGAAGA
                      ____________________________________________________________
consensus             GAGCAGAGGGGTTTGCTTCCTCAGTCTTACGTGGCTCTTAGACTGTTTCCCTAATGAAGA
 
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JMSF014C17+           TGAAGGAGAATCGGCGTGAAAGTGGAAAGGAGAAAACTTGGGGGCAGACACTCGATTGTG
                      ____________________________________________________________
consensus             TGAAGGAGAATCGGCGTGAAAGTGGAAAGGAGAAAACTTGGGGGCAGACACTCGATTGTG
 
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JMSF014C17+           AAGCAAAGCGCAAGCACATTGCAGCTCCATTTTCGCTTTCGAGGTTTTAGGGGTTCCGCC
                      ____________________________________________________________
consensus             AAGCAAAGCGCAAGCACATTGCAGCTCCATTTTCGCTTTCGAGGTTTTAGGGGTTCCGCC