Contig 009259:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O20Sequence520009259 (5)gb|KDO70851.1|3e-07hypothetical protein CISIN_1g0074091mg, partial [Citrus sinensis] gb|KDO70852.1|826011048 (3)ref|XP_009780774.1|3e-108PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv
JMFF020H07Sequence551009259 (5)ref|XP_003521518.1|2e-12PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Glycine max] g750011048 (3)ref|XP_009780774.1|7e-108PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv
JMFF022O23Sequence499009259 (5)749016964ref|XP_009780774.1|9e-106PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv
JMSF013P10Sequence314009259 (5)755011048 (3)ref|XP_009594545.1|2e-101PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana tome
JMSF051I10Sequence646009259 (5)ref|XP_010101080.1|1e-39hypothetical protein L484_007315 [Morus notabilis] gb|EXB86892.1| hypothetical p735024700ref|XP_009780774.1|3e-91PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv

Alignment

This contig is upended


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JMSF051I10+                  ATCCAAGGCACTGTAATGTAGCTTGCTCAGATGGGTGGACACTGCAAATAGCG
                      ____________________________________________________________
consensus                    ATCCAAGGCACTGTAATGTAGCTTGCTCAGATGGGTGGACACTGCAAATAGCG
 
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JMSF051I10+           ACTTTCTTATCACTTTGTATGCGGTACCATTTGTATCTCAAGGTGTGGCCGTCAATAGGC
                      ____________________________________________________________
consensus             ACTTTCTTATCACTTTGTATGCGGTACCATTTGTATCTCAAGGTGTGGCCGTCAATAGGC
 
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JMSF051I10+           GCGGAATCTAGAACATCGTCAGTAATAACAGATTTATCTGGGCGGCGCAAGAGAACATAA
JMFF007O20+                                                      GGCGCAAGAGAACATAA
JMFF020H07+                                      ACAGATTTATCTGGGCGGCGCAAGAGAACATAA
                      ____________________________________________________________
consensus             GCGGAATCTAGAACATCGTCAGTAATAACAGATTTATCTGGGCGGCGCAAGAGAACATAA
 
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JMSF051I10+           GGAGTGAGCTCGCAACCTACGATCGGAATGTCTGAAGGGAGGTGCACTCGCAGAACAGTC
JMFF007O20+           GGAGTGAGCTCGCAACCTACGATCGGAATGTCTGAAGGGAGGTGCACTCGCAGAACAGTC
JMFF020H07+           GGAGTGAGCTCGCAACCTACGATCGGAATGTCTGAAGGGAGGTGCACTCGCAGAACAGTC
JMFF022O23+               TGAGCTCGCAACCTACGATCGGAATGTCTGAAGGGAGGTGCACTCGCAGAACAGTC
                      ____________________________________________________________
consensus             GGAGTGAGCTCGCAACCTACGATCGGAATGTCTGAAGGGAGGTGCACTCGCAGAACAGTC
 
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JMSF051I10+           AGCATTCTGGGAGATGTGCAACGGCCCACTCTCTTCTCACTACTTCTTCACCTATAGCTA
JMFF007O20+           AGCATTCTGGGAGATGTGCAACGGCCCACTCTCTTCTCACTACTTCTTCACCTATAGCTA
JMFF020H07+           AGCATTCTGGGAGATGTGCAACGGCCCACTCTCTTCTCACTACTTCTTCACCTATAGCTA
JMFF022O23+           AGCATTCTGGGAGATGTGCAACGGCCCACTCTCTTCTCACTACTTCTTCACCTATAGCTA
                      ____________________________________________________________
consensus             AGCATTCTGGGAGATGTGCAACGGCCCACTCTCTTCTCACTACTTCTTCACCTATAGCTA
 
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JMSF051I10+           CTACTAGGAAACCACCAGCGTCGAGAAAACTTAATTCTTCAATATCTAAACACGGGATAA
JMFF007O20+           CTACTAGGAAACCACCAGCGTCGAGAAAACTTAATTCTTCAATATCTAAACACGGGATAA
JMFF020H07+           CTACTAGGAAACCACCAGCGTCGAGAAAACTTAATTCTTCAATATCTAAACACGGGATAA
JMFF022O23+           CTACTAGGAAACCACCAGCGTCGAGAAAACTTAATTCTTCAATATCTAAACACGGGATAA
                      ____________________________________________________________
consensus             CTACTAGGAAACCACCAGCGTCGAGAAAACTTAATTCTTCAATATCTAAACACGGGATAA
 
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JMSF051I10+           CAATCAATCGGCGGCGGACATGTGGCGGATCCGCCATCACCTGACCTCAGCACCAATCGC
JMFF007O20+           CAATCAATCGGCGGCGGACATGTGGCGGATCCGCCATCACCTGACCTCAGCACCAATCGC
JMFF020H07+           CAATCAATCGGCGGCGGACATGTGGCGGATCCGCCATCACCTGACCTCAGCACCAATCGC
JMFF022O23+           CAATCAATCGGCGGCGGACATGTGGCGGATCCGCCATCACCTGACCTCAGCACCAATCGC
JMSF013P10+                                                         TCAGCACCAATCGC
                      ____________________________________________________________
consensus             CAATCAATCGGCGGCGGACATGTGGCGGATCCGCCATCACCTGACCTCAGCACCAATCGC
 
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JMSF051I10+           CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
JMFF007O20+           CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
JMFF020H07+           CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
JMFF022O23+           CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
JMSF013P10+           CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
                      ____________________________________________________________
consensus             CAGCCTGACCTCCGGTTTAGCCCCTCTCTCTATTGCAGACCAAAACCCTAAATTTCTAAC
 
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JMSF051I10+           AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
JMFF007O20+           AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
JMFF020H07+           AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
JMFF022O23+           AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
JMSF013P10+           AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
                      ____________________________________________________________
consensus             AGCAAAATCAAATTGTTTTTGAAAAAACCCCCCACAAAAGTAAATAAAAATGAAAACTTT
 
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JMSF051I10+           GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
JMFF007O20+           GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
JMFF020H07+           GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
JMFF022O23+           GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
JMSF013P10+           GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
                      ____________________________________________________________
consensus             GGAGAAAAGATTCGAAGATGGGAAGAAATGAAGCAGGTGCGGAGAGCTGAAAGAAAAAAC
 
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JMSF051I10+           GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATG         
JMFF007O20+           GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATGGGATTTCAT
JMFF020H07+           GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATGGGATTTCAT
JMFF022O23+           GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATGGGATTTCAT
JMSF013P10+           GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATGGGATTTCAT
                      ____________________________________________________________
consensus             GATCGAGCTTAGAGATTAGAGAGTGAAATGGAGTTTTAGAGAGATGGCATGGGATTTCAT
 
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JMFF007O20+           TGATTGGTGATTTAGGGTTTTAC                                     
JMFF020H07+           TGATTGGTGATTTAGGGTTTTAC                                     
JMFF022O23+           TGATTGGTGATTTAGGGTTTTAC                                     
JMSF013P10+           TGATTGGTGATTTAGGGTTTTACACAGAAGAGGAGAGGGGGAAAAAAGAGAAGAAAGTTC
                      ____________________________________________________________
consensus             TGATTGGTGATTTAGGGTTTTACACAGAAGAGGAGAGGGGGAAAAAAGAGAAGAAAGTTC