Contig 009256:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS093G03Sequence316009256 (2)ref|XP_006339852.1|4e-06PREDICTED: F-box protein SKIP2-like [Solanum tuberosum]
JMSF013J13Sequence552009256 (2)ref|XP_006339852.1|3e-23PREDICTED: F-box protein SKIP2-like [Solanum tuberosum]741022484ref|XP_009619626.1|8e-66PREDICTED: F-box protein At1g47056-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF013J13+                                                           ACGAGGAGCCAC
                      ____________________________________________________________
consensus                                                             ACGAGGAGCCAC
 
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JMSF013J13+           TTCCGGCAGACGAGGGAGCAGCTTTTCCGGTCACCGGAGCTCAAGGATTGAAAAATCAGC
                      ____________________________________________________________
consensus             TTCCGGCAGACGAGGGAGCAGCTTTTCCGGTCACCGGAGCTCAAGGATTGAAAAATCAGC
 
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JMFS093G03+                                              GCACCCTCCGAAACCGTCCTCCGAA
JMSF013J13+           GCTAAGCATTCGTCAGGAACCCCGTCGCTGTAATCGCACCCTCCGAAACCGTCCTCCGAA
                      ____________________________________________________________
consensus             GCTAAGCATTCGTCAGGAACCCCGTCGCTGTAATCGCACCCTCCGAAACCGTCCTCCGAA
 
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JMFS093G03+           CTTGGCGCGGCGTCTTCATCCGACTGCACCATCGACAAAACATCCTGCTGTGAATGATCA
JMSF013J13+           CTTGGCGCGGCGTCTTCATCCGACTGCACCATCGACAAAACATCCTGCTGTGAATGATCA
                      ____________________________________________________________
consensus             CTTGGCGCGGCGTCTTCATCCGACTGCACCATCGACAAAACATCCTGCTGTGAATGATCA
 
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JMFS093G03+           GACATTGATCGGCGATGTTTAGCAACAGGCTTCGGATAACAACTACGGGTACGGTGAGTA
JMSF013J13+           GACATTGATCGGCGATGTTTAGCAACAGGCTTCGGATAACAACTACGGTTACGGTGAGTA
                      ____________________________________________________________
consensus             GACATTGATCGGCGATGTTTAGCAACAGGCTTCGGATAACAACTACGGTTACGGTGAGTA
 
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JMFS093G03+           GACCCACCAGGCCAGGATTGGTGGATCGACGGAGACTGGCCCATCCAGATTCGGCGATAT
JMSF013J13+           GACCCACCAGGCCAGGATTGGTGGATCGACGGAGACTGGCCCATCCAGATTCGGCGATAT
                      ____________________________________________________________
consensus             GACCCACCAGGCCAGGATTGGTGGATCGACGGAGACTGGCCCATCCAGATTCGGCGATAT
 
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JMFS093G03+           AAGACACGAGGCCGATTCACGGCAAGCGCAATTCACGCGCCGCCCTAGATTCAACGCAGA
JMSF013J13+           AAGACACGAGGCCGATTCACGGCAAGCGCAATTCACGCGCCGCCCTAGATTCAACGCAGA
                      ____________________________________________________________
consensus             AAGACACGAGGCCGATTCACGGCAAGCGCAATTCACGCGCCGCCCTAGATTCAACGCAGA
 
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JMFS093G03+           ATCGGGTGGTGTGCAGATTAGATTTGGGGATGAAAAAAAAACAAACAAACA         
JMSF013J13+           ATCGGGTGGTGTACAGATTAGATTTGGGGATGAAAAAAAAACAAACAAACAAACGAGCGA
                      ____________________________________________________________
consensus             ATCGGGTGGTGTGCAGATTAGATTTGGGGATGAAAAAAAAACAAACAAACAAACGAGCGA
 
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JMSF013J13+           TCGATGAATCTTTTGAGCAATTGGGGCAAATTGGCAAAGTTTTAATAGGAAGGAGGGTTT
                      ____________________________________________________________
consensus             TCGATGAATCTTTTGAGCAATTGGGGCAAATTGGCAAAGTTTTAATAGGAAGGAGGGTTT
 
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JMSF013J13+           GACATTTGACCCGTCAAAACCAGATTGGACCGCCAAAGGGGCAACACCAATTTGTGCGCC
                      ____________________________________________________________
consensus             GACATTTGACCCGTCAAAACCAGATTGGACCGCCAAAGGGGCAACACCAATTTGTGCGCC