| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017F09 | Sequence | 627 | 009254 (6) | emb|CAD33264.1| | 9e-108 | carotenoid cleavage oxygenase [Solanum lycopersicum] | 760 | 018010 | gb|AHE41421.1| | 4e-49 | carotenoid cleavage dioxygenase 1, partial [Lycium chinense] |
| JMFF051C09 | Sequence | 620 | 009254 (6) | ref|NP_001234542.1| | 3e-105 | carotenoid cleavage dioxygenase 1-1 [Solanum lycopersicum] gb|AAT68187.1| carote | 615 | 011223 (4) | ref|XP_010695196.1| | 7e-17 | PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Beta vulgaris subsp. |
| JMFN041N02 | Sequence | 247 | 009254 (6) | emb|CAN79030.1| | 7e-17 | hypothetical protein VITISV_032896 [Vitis vinifera] | |||||
| JMSF013H07 | Sequence | 186 | 009254 (6) | 801 | 011223 (4) | gb|AHE41421.1| | 2e-105 | carotenoid cleavage dioxygenase 1, partial [Lycium chinense] | |||
| JMSF036O09 | Sequence | 565 | 009254 (6) | emb|CAD33264.1| | 1e-51 | carotenoid cleavage oxygenase [Solanum lycopersicum] | 773 | 011223 (4) | ref|XP_009784266.1| | 9e-110 | PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nico |
| JMSF052O22 | Sequence | 592 | 009254 (6) | emb|CAD33264.1| | 7e-75 | carotenoid cleavage oxygenase [Solanum lycopersicum] | 895 | 011223 (4) | ref|XP_009784266.1| | 4e-136 | PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nico |
This contig is upended
. : . : . : . : . : . :
JMFF017F09+ CTCCAAAACTTTAACTACA
JMFF051C09+ ACTTTAACTACA
____________________________________________________________
consensus CTCCAAAACTTTAACTACA
. : . : . : . : . : . :
JMFF017F09+ TATGGTTTATCAGCCTCTGAAAGTGCCAAAAGCTTCCCATGGTGATAGATTAAAGCTGTA
JMFF051C09+ TATGGTTTATCAGCCTCTGAAAGTGCCAAAAGCTTCCCATGGTGATAGATTAAAGCTGTA
____________________________________________________________
consensus TATGGTTTATCAGCCTCTGAAAGTGCCAAAAGCTTCCCATGGTGATAGATTAAAGCTGTA
. : . : . : . : . : . :
JMFF017F09+ TTGGCAGTGCTTGTTCCATAGGAAATATCTAATACTTTGAGCTTTGTTCTTAATGTTTGA
JMFF051C09+ TTGGCAGTGCTGTTCNCATAGGAAATATCTAATACTTTGAGCTTTGTTCTTAATGTTTGA
JMSF036O09+ TGA
____________________________________________________________
consensus TTGGCAGTGCTTTTTCCATAGGAAATATCTAATACTTTGAGCTTTGTTCTTAATGTTTGA
. : . : . : . : . : . :
JMFF017F09+ ATGAAAACCGTAAGCAATCCGAACAACCCTTTAAGATCTCCAATCTTCATAAACTTAGCT
JMFF051C09+ ATGAAAACCGTAAGCAATCCGAACAACCCTTTAAGATCTCCAATCTTCATAAACTTAGCT
JMSF036O09+ ANGAAAACNGTAAGCAATCCGAACAACCCTTTAAGATNTCCAATNTTCATAAANTTAGCT
JMSF052O22+ GAAAACCGTAAGCAATCCGAACAACCCTTTAAGATCTCCAATCTTCATAAACTTAGCT
____________________________________________________________
consensus ATGAAAACCGTAAGCAATCCGAACAACCCTTTAAGATCTCCAATCTTCATAAACTTAGCT
. : . : . : . : . : . :
JMFF017F09+ CCTCCAAAAAACTGTTCTTGCTTAAGACGTGATGTCGTCACAAAACGAGAGACATATGTT
JMFF051C09+ CCTCCAAAAAACTGTTCTTGCTTAAGACGTGATGTCGTCACAAAACGAGAGACATATGTT
JMSF036O09+ CNTCCAAAAAANTGTTCTTGCTTAAGACGTGAGGTCGTCACAAAACGAGAGACATATGTT
JMSF052O22+ CCTCCAAAAAACTGTTCTTGCTTAAGANGTGANGTCGTCACAAAACGAGAGACATATGTT
____________________________________________________________
consensus CCTCCAAAAAACTGTTCTTGCTTAAGACGTGATGTCGTCACAAAACGAGAGACATATGTT
. : . : . : . : . : . :
JMFF017F09+ GCTTTTCCATCTTTAATGCGCAAGCCATGAATCATTCCATCTCCATCAAACCAATGATAC
JMFF051C09+ GCTTTTCCATCTTTAATGCGCAAGCCATGAATCATTCCATCTCCATCAAACCAATGATAC
JMSF036O09+ GCTTTTCCATCTNTAATGCGCAAGCCATGAATCATTCCATNTCCATCAAANCAANGATAC
JMSF052O22+ GCTTTTCCATCTTTAATGCGCAAGCCATGAATCATTCCATCTCCATCAAACCAATGATAC
____________________________________________________________
consensus GCTTTTCCATCTTTAATGCGCAAGCCATGAATCATTCCATCTCCATCAAACCAATGATAC
. : . : . : . : . : . :
JMFF017F09+ CCGGCCACTGGAGCAAATTTTGGATTCGGACCGACCCTGACAAACTCACCATTTAGGCAT
JMFF051C09+ CCGGCCACTGGAGCAAATTTTGGATTCGGACCGACCCTGACAAACTCACCATTTAGGCAT
JMSF036O09+ CCGGCCACTGGAGCAAATNTTGGATTCGGACCGACCCTGACAAACTCACCANTTAGGCAN
JMSF052O22+ CCGGCCACTGGAGCAAATTTTGGATTCGGACCGACCCTGACAAACTCACCATTTAGGCAT
____________________________________________________________
consensus CCGGCCACTGGAGCAAATTTTGGATTCGGACCGACCCTGACAAACTCACCATTTAGGCAT
. : . : . : . : . : . :
JMFF017F09+ TCAGGGAGGTGGCCAGAGACAGGAAGATCCTTGCAAGGAGGGGTTTCTTCAGGAGCTGGA
JMFF051C09+ TCAGGGAGGTGGCCAGAGACAGGAAGATCCTTGCAAGGAGGGGTTTCTTCAGGAGCTGGA
JMSF036O09+ TCAGGGAGGNGGCCAGAGACAGGAAGATCCTTGCAAGGAGGGGTTTNTTCAGGAGCNGGA
JMFN041N02- TCCTTGCAAGGAGGGGTTTCTTCAGGAGCTGGA
JMSF052O22+ TCAGGGAGGTGGCCAGAGACAGGAAGATCCTTGCAAGGAGGGGTTTCTTCAGGAGCNGGA
____________________________________________________________
consensus TCAGGGAGGTGGCCAGAGACAGGAAGATCCTTGCAAGGAGGGGTTTCTTCAGGAGCTGGA
. : . : . : . : . : . :
JMFF017F09+ GCGAAATTACCAGAAAGATAGTGAAGCGGTTTGGAAGAATCATGCATCATCTTCACGATC
JMFF051C09+ GCGAAATTACCAGAAAGATAGTGAAGCGGTTTGGAAGAATCATGCATCACCTTCACGATC
JMSF036O09+ GNGAAATTACCAGAAAGATAGNGAAGCGGTTTGGAAGAATCATGCATCACNTTCACGATC
JMFN041N02- GCGAAATTACCAGAAAGATAGTGAAGCGGTTTGGAAGAATCATGCATCACCTTCACGATC
JMSF052O22+ GCGAAATTACCAGAAAGATAGTGAAGCGGTTTGGAAGAATCATGCATCACCTTCACGATC
____________________________________________________________
consensus GCGAAATTACCAGAAAGATAGTGAAGCGGTTTGGAAGAATCATGCATCACCTTCACGATC
. : . : . : . : . : . :
JMFF017F09+ GCCCACTCCAACCAATCTATGGCCTTGGCGGCGATACCACTCTGCGGCGTTGGCTTCACC
JMFF051C09+ GCCCACTCCAACCAATCTATGGCCTTGGCGGCGATACCACTCTGCGGCGTTGGCTTCACC
JMSF036O09+ GCCCACTCCAANCAATNTATGGCCTTGGCGGNGATACCACTCTGCGGNGTNGGGTTCACC
JMFN041N02- GCCCACTCCAACCAATCTATGGCCTTGGCGGCGATACCACTCTGCGGCGTTGGCTTCACC
JMSF052O22+ GCCCACTCCAACCAATCTATGGCCTTGGCGGNGATACCACTCTGNGGCGTNGGCTTCACC
JMSF013H07+ TTCACC
____________________________________________________________
consensus GCCCACTCCAACCAATCTATGGCCTTGGCGGCGATACCACTCTGCGGCGTTGGCTTCACC
. : . : . : . : . : . :
JMFF017F09+ ACCACCACACCACCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
JMFF051C09+ ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
JMSF036O09+ ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
JMFN041N02- ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
JMSF052O22+ ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
JMSF013H07+ ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
____________________________________________________________
consensus ACCACCACACCTCCCTTCACTCTCTCCACTCCATTCTCTTCGTTCCTCCCCATCTCTCTC
. : . : . : . : . : . :
JMFF017F09+ TCTCTCTC
JMFF051C09+ TCTCTCTC
JMSF036O09+ TCTCTCTCTCTCTCTCTCTCTGCACAGTGAAGGTAGTGAGTAGTGAGTGAGTAACGACTC
JMFN041N02- TCTCTCTCTCTCTCTCTCTCTGCACAGTGA
JMSF052O22+ TCTCTCTCTCTCTCTCTCTCTGCACAGTGAAGGTAGTGAGTAGTGAGTGAGTAACGACTC
JMSF013H07+ TCTCTCTCTCTCTCTCTCTCTGCACAGTGAAGGTAGTGAGTAGTGAGTGAGTAACGACTC
____________________________________________________________
consensus TCTCTCTCTCTCTCTCTCTCTGCACAGTGAAGGTAGTGAGTAGTGAGTGAGTAACGACTC
. : . : . : . : . : . :
JMSF036O09+ GTGTCT
JMSF052O22+ GTGTCTGGTGAAGGAGAGGACAGCGTTTCCTTTGTGGATATCGGTTGTCGC
JMSF013H07+ GTGTCTGGTGAAGGAGAGGACAGCGTTTCCTTTGTGGATATCGGTTGTCGCACTTCCGCC
____________________________________________________________
consensus GTGTCTGGTGAAGGAGAGGACAGCGTTTCCTTTGTGGATATCGGTTGTCGCACTTCCGCC