Contig 009251:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001I10Sequence484009251 (2)ref|XP_007210228.1|2e-34hypothetical protein PRUPE_ppa015539mg [Prunus persica] gb|EMJ11427.1| hypotheti726007066 (2)ref|XP_006470496.1|130PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
JMSF013A22Sequence483009251 (2)gb|ABD33126.2|7e-43RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]784007066 (2)ref|XP_006470496.1|138PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]

Alignment

This contig is upended


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JMSF001I10+                                             CCAGCGCGTGTTCTTGCGAATGATTT
                      ____________________________________________________________
consensus                                               CCAGCGCGTGTTCTTGCGAATGATTT
 
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JMSF001I10+           CCCGGGTTTCAGACAGGCTGCTCCAAATAATAAAGGATGGGTTGTGACCTTTAACAGAAT
                      ____________________________________________________________
consensus             CCCGGGTTTCAGACAGGCTGCTCCAAATAATAAAGGATGGGTTGTGACCTTTAACAGAAT
 
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JMSF001I10+           CAAAAAAAGAGGAGTTAGGATAATATCTGCATTTGAACAATCTGGCAGCAAGAGAGAGGA
                      ____________________________________________________________
consensus             CAAAAAAAGAGGAGTTAGGATAATATCTGCATTTGAACAATCTGGCAGCAAGAGAGAGGA
 
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JMSF001I10+           TTTTCTATTAATCTCCAAGATTGCTTGCAGAGGAGAGCTAAGTTAAACTCCCTGAGACTT
                      ____________________________________________________________
consensus             TTTTCTATTAATCTCCAAGATTGCTTGCAGAGGAGAGCTAAGTTAAACTCCCTGAGACTT
 
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JMSF001I10+           CTGAAACCAAGACCTCCCCAAAGCTTAGGGACACATAAAGATGACTAAGATTTCCAACGG
                      ____________________________________________________________
consensus             CTGAAACCAAGACCTCCCCAAAGCTTAGGGACACATAAAGATGACTAAGATTTCCAACGG
 
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JMSF001I10+           ATTCCTTGCCTCCCACCTACTTCACCCTTCCACCAAAAGGCATTCATGACTCTTTCAATC
JMSF013A22+                                                                    ATC
                      ____________________________________________________________
consensus             ATTCCTTGCCTCCCACCTACTTCACCCTTCCACCAAAAGGCATTCATGACTCTTTCAATC
 
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JMSF001I10+           TCACTGGTAAGGCTCTTTGGAAGAAGGAAAACGCTCATGGCATAGCACGGGATGGCTTGT
JMSF013A22+           TCACTGGTAAGGCTCTTTGGAAGAAGGAAAACGCTCATGGCATAGCACGGGATGGCTTGT
                      ____________________________________________________________
consensus             TCACTGGTAAGGCTCTTTGGAAGAAGGAAAACGCTCATGGCATAGCACGGGATGGCTTGT
 
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JMSF001I10+           ATGACATTTTTCAATAGAATCTCTCTTCCAGCTCTAGAAAGGAGCTTGTGACCCCAACTC
JMSF013A22+           ATGACATTTTTCAATAGAATCTCTCTTCCAGCTCTAGAAAGGAGCTTGTGACCCCAACTC
                      ____________________________________________________________
consensus             ATGACATTTTTCAATAGAATCTCTCTTCCAGCTCTAGAAAGGAGCTTGTGACCCCAACTC
 
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JMSF001I10+           TGCACTCTTGAAACGATTCTGTTTTTGATAAAACC                         
JMSF013A22+           TGCACTCTTGAAACGATTCTGTTTTTGATAAAACCCAAGATTTGAGTCTTGTTTCTGCCC
                      ____________________________________________________________
consensus             TGCACTCTTGAAACGATTCTGTTTTTGATAAAACCCAAGATTTGAGTCTTGTTTCTGCCC
 
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JMSF013A22+           ACAAGAGAGGGGAGACCAAGATAAAATCCATTGCAAATGTCCCTCCTAACACCAAGTATG
                      ____________________________________________________________
consensus             ACAAGAGAGGGGAGACCAAGATAAAATCCATTGCAAATGTCCCTCCTAACACCAAGTATG
 
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JMSF013A22+           TCTTCCACTTGAATGCAGACTGATTCCCCTACATTTTTGCTGAAAATAAGGGCTGATTTG
                      ____________________________________________________________
consensus             TCTTCCACTTGAATGCAGACTGATTCCCCTACATTTTTGCTGAAAATAAGGGCTGATTTG
 
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JMSF013A22+           TCAAGGTTGATGACTTGACCTGAGGCAGCCGAATAAGAATCCAGAATTGATTTAAAGACC
                      ____________________________________________________________
consensus             TCAAGGTTGATGACTTGACCTGAGGCAGCCGAATAAGAATCCAGAATTGATTTAAAGACC
 
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JMSF013A22+           ATAGTTTCAGTAGGATCAGCTCTGAAAAAGAAATAACTATCATCCGCGAAAAGTAGATGT
                      ____________________________________________________________
consensus             ATAGTTTCAGTAGGATCAGCTCTGAAAAAGAAATAACTATCATCCGCGAAAAGTAGATGT
 
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JMSF013A22+           GTGATGATTGGAGCATTTCTGGCAATTGAGACACCATGAAGGGAACCTTGCCGTTCAGTC
                      ____________________________________________________________
consensus             GTGATGATTGGAGCATTTCTGGCAATTGAGACACCATGAAGGGAACCTTGCCGTTCAGTC