Contig 009247:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP004H05Sequence608009247 (2)emb|CDP05925.1|6e-43unnamed protein product [Coffea canephora]
JMSF012J19Sequence369009247 (2)783021405ref|XP_009625380.1|370PREDICTED: xylosyltransferase 2-like isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-                                    GATTCTAGGTCTAGATGGACAACATAGTAGTTGC
                      ____________________________________________________________
consensus                                       GATTCTAGGTCTAGATGGACAACATAGTAGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          GTGGATGATGCAGTGCTTGCAACGTCCTCCATAGCTTTTCTAGATCACCTCTTGAACCGG
                      ____________________________________________________________
consensus             GTGGATGATGCAGTGCTTGCAACGTCCTCCATAGCTTTTCTAGATCACCTCTTGAACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          ATATCAGATACGCAAAACGTGGAACAGAAGGACCACTAGAAGGAGGTGGAGATTGCCTAA
                      ____________________________________________________________
consensus             ATATCAGATACGCAAAACGTGGAACAGAAGGACCACTAGAAGGAGGTGGAGATTGCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          CTTTTGCTTCAGCAAAATACGAGCTCGTTTGATTCGACGCAAGCCGGGATGGAAAGATTG
                      ____________________________________________________________
consensus             CTTTTGCTTCAGCAAAATACGAGCTCGTTTGATTCGACGCAAGCCGGGATGGAAAGATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          AGAAAATTGAATTGATTTGTAGCGAAGAAAGCAGGCCCATATTAAACGAGGTCGCAAGAA
                      ____________________________________________________________
consensus             AGAAAATTGAATTGATTTGTAGCGAAGAAAGCAGGCCCATATTAAACGAGGTCGCAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          GGAAGATACATAXXXXXXXXXXXXXXXAAAGAGGAAACACCCATTTCTTCTCCATGTTTG
                      ____________________________________________________________
consensus             GGAAGATACATANNNNNNNNNNNNNNNAAAGAGGAAACACCCATTTCTTCTCCATGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          CAGACCCCATCGCAATACCTTAGCATGTGTTCTCACCGCAAGAATCACATATATATATAT
                      ____________________________________________________________
consensus             CAGACCCCATCGCAATACCTTAGCATGTGTTCTCACCGCAAGAATCACATATATATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          AACTATACCCCACAAAAACGTCGAGAATGGCAGTCCTAAAGGTCAGCAACCTCTGGTTCC
                      ____________________________________________________________
consensus             AACTATACCCCACAAAAACGTCGAGAATGGCAGTCCTAAAGGTCAGCAACCTCTGGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          CCTTTTTGAACGGAAATTCTCTGCAAAAGGATGTGATTGAGTTCTTCCTACTGAATTCCA
JMSF012J19+                                                              TGAATTCCA
                      ____________________________________________________________
consensus             CCTTTTTGAACGGAAATTCTCTGCAAAAGGATGTGATTGAGTTCTTCCTACTGAATTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          AAAGTTGAGCCTCTACTTTAGGCTGTTGAATCACAAGATACCGTACAAAACTGATTCTCA
JMSF012J19+           AAAGTTGAGCCTCTACTTTAGGCTGTTGAATCACAAGATACCGTACAAAACTGATTCTCA
                      ____________________________________________________________
consensus             AAAGTTGAGCCTCTACTTTAGGCTGTTGAATCACAAGATACCGTACAAAACTGATTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP004H05-          GAGGATTAAACTATAGTCTTAGTACAGACGTGGA                          
JMSF012J19+           GAGGATTAAACTATAGTCTTAGTACAGACGTGGAAACTCCGCAAAGGACTTGCTTGAAGA
                      ____________________________________________________________
consensus             GAGGATTAAACTATAGTCTTAGTACAGACGTGGAAACTCCGCAAAGGACTTGCTTGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012J19+           GTTCGTGGACGTTGAGATTTTAGACGATGTGCCGCCGAGTACAGAAAAAGAGAGAGAGAG
                      ____________________________________________________________
consensus             GTTCGTGGACGTTGAGATTTTAGACGATGTGCCGCCGAGTACAGAAAAAGAGAGAGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012J19+           AGAGAGAGAGAGTATATAATAATGAAAGGGGAGCTGAACCCGAGGAAATGGATTGTTTTG
                      ____________________________________________________________
consensus             AGAGAGAGAGAGTATATAATAATGAAAGGGGAGCTGAACCCGAGGAAATGGATTGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012J19+           TTAGTGTATTGTTGATGTTTTCTGGGAAGTCATTGGAATGAATGAATGAATGAATGTTTT
                      ____________________________________________________________
consensus             TTAGTGTATTGTTGATGTTTTCTGGGAAGTCATTGGAATGAATGAATGAATGAATGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012J19+           CAGATTTAGTTTCGTGAAGATGAAGACGAACAACTTATTAGACGAAAGGAAAGAAACCCC
                      ____________________________________________________________
consensus             CAGATTTAGTTTCGTGAAGATGAAGACGAACAACTTATTAGACGAAAGGAAAGAAACCCC