| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010L04 | Sequence | 620 | 009235 (9) | ref|XP_011080124.1| | 3e-101 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 808 | 005389 (8) | ref|XP_011080124.1| | 3e-81 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF016E09 | Sequence | 546 | 009235 (9) | ref|XP_011080124.1| | 2e-85 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 717 | 005389 (8) | emb|CDP03802.1| | 3e-43 | unnamed protein product [Coffea canephora] |
| JMFF016E10 | Sequence | 550 | 009235 (9) | ref|XP_011080124.1| | 7e-87 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 778 | 005389 (8) | ref|XP_009586626.1| | 1e-58 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMFF017B05 | Sequence | 594 | 009235 (9) | ref|XP_011080124.1| | 6e-92 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 781 | 005389 (8) | emb|CDP03802.1| | 1e-43 | unnamed protein product [Coffea canephora] |
| JMSF001A21 | Sequence | 270 | 009235 (9) | ref|XP_002301843.1| | 2e-21 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 670 | 005389 (8) | emb|CDP03802.1| | 5e-44 | unnamed protein product [Coffea canephora] |
| JMSF011C08 | Sequence | 265 | 009235 (9) | ref|XP_002301843.1| | 3e-08 | hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo | 784 | 005389 (8) | ref|XP_011080124.1| | 8e-83 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF026D02 | Sequence | 664 | 009235 (9) | ref|XP_011080124.1| | 2e-105 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 719 | 005389 (8) | ref|XP_009586626.1| | 2e-45 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
| JMSF029N06 | Sequence | 632 | 009235 (9) | ref|XP_011080124.1| | 2e-106 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 710 | 021494 | emb|CDP03802.1| | 6e-44 | unnamed protein product [Coffea canephora] |
| JMSF040O20 | Sequence | 675 | 009235 (9) | ref|XP_011080124.1| | 3e-102 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch | 755 | 005389 (8) | ref|XP_011080124.1| | 2e-90 | PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch |
This contig is upended
. : . : . : . : . : . :
JMSF029N06+ GTATAATAGCTTCCTCAGCTGCAGCTTTAGCCN
JMSF040O20+ CCTCGGGAATTTCTTGTATAATAGCTTCNTCAGCTGCAGCTTTAGCCC
____________________________________________________________
consensus CCTCGGGAATTTCTTGTATAATAGCTTCCTCAGCTGCAGCTTTAGCCC
. : . : . : . : . : . :
JMSF029N06+ TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMFF010L04+ CATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMSF026D02+ GCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMFF017B05+ ATAAATCTCA
JMSF040O20+ TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
____________________________________________________________
consensus TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
. : . : . : . : . : . :
JMSF029N06+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF010L04+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMSF026D02+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF016E10+ TTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF016E09+ GCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF017B05+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMSF040O20+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
____________________________________________________________
consensus AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
. : . : . : . : . : . :
JMSF029N06+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF010L04+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMSF026D02+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF016E10+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF016E09+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF017B05+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMSF040O20+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
____________________________________________________________
consensus CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
. : . : . : . : . : . :
JMSF029N06+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF010L04+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMSF026D02+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF016E10+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF016E09+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF017B05+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCACTGGAACAA
JMSF040O20+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
____________________________________________________________
consensus CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
. : . : . : . : . : . :
JMSF029N06+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF010L04+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMSF026D02+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF016E10+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF016E09+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF017B05+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMSF040O20+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
____________________________________________________________
consensus TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
. : . : . : . : . : . :
JMSF029N06+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF010L04+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMSF026D02+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF016E10+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF016E09+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF017B05+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMSF001A21+ ATC
JMSF040O20+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
____________________________________________________________
consensus GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
. : . : . : . : . : . :
JMSF029N06+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF010L04+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF026D02+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF016E10+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF016E09+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF017B05+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF001A21+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF040O20+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF011C08+ ACAGATGATCTCCCTCCAGTTCCCT
____________________________________________________________
consensus CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
. : . : . : . : . : . :
JMSF029N06+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF010L04+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF026D02+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF016E10+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF016E09+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF017B05+ TGCGAAC
JMSF001A21+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF040O20+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF011C08+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
____________________________________________________________
consensus TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
. : . : . : . : . : . :
JMSF029N06+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF010L04+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF026D02+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF016E10+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF016E09+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF001A21+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF040O20+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF011C08+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
____________________________________________________________
consensus TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
. : . : . : . : . : . :
JMSF029N06+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTC
JMFF010L04+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF026D02+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCACGTAACGGCCTGCATTGTTCTTCGTCTGC
JMFF016E10+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMFF016E09+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF001A21+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCATCTGC
JMSF040O20+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF011C08+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
____________________________________________________________
consensus ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
. : . : . : . : . : . :
JMFF010L04+ GCTGAGCTCTGGGAGAAAGCGATT
JMSF026D02+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMFF016E10+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMFF016E09+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMSF001A21+ GCTGAGCTCTGGGAGAAAGCGATTG
JMSF040O20+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMSF011C08+ GCTGAGCTCTGGGAGAAAGCGATTGCGAATTGCTGTTTGCTGCAAAGGCCTGTGAAAATC
____________________________________________________________
consensus GCTGAGCTCTGGGAGAAAGCGATTGCGAATTGCTGTTTGCTGCAAAGGCCTGTGAAAATC