Contig 009233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011B02Sequence263009233 (3)769002888 (3)ref|XP_004247413.1|7e-103PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF023N10Sequence655009233 (3)ref|XP_006359849.1|7e-48PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]726002888 (3)ref|XP_004247413.1|4e-97PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF028H12Sequence665009233 (3)ref|XP_006359849.1|5e-62PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]776002888 (3)ref|XP_009610859.1|3e-100PREDICTED: blue-light photoreceptor PHR2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+                                                                 GTCAGA
JMSF028H12+                                                               AGGTCAGA
                      ____________________________________________________________
consensus                                                                 AGGTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           AACGGACTCGATCAAGAATGTTGCCCGGTACGGGCCGGTCTTGTCAAAGCCGTTGTAGGA
JMSF028H12+           AACGGACTCGATCAAGAATGTTGCCCGGTACGGGCCGGTCTTGTCAAAGCCGTTGTAGGA
                      ____________________________________________________________
consensus             AACGGACTCGATCAAGAATGTTGCCCGGTACGGGCCGGTCTTGTCAAAGCCGTTGTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           CTTCCCGTAGTCGCTCGGGTCGAAACAGTAAAC-GGCAAAACGGACATGGACTCGTTATT
JMSF028H12+           CTTCCCGTAGTCGCTCGGGTCGAAACAGTAAACGGGCAAAACGGAAATGGACTCGTTATT
                      ____________________________________________________________
consensus             CTTCCCGTAGTCGCTCGGGTCGAAACAGTAAACGGGCAAAACGGACATGGACTCGTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           GGCTGCGTTGAGGCACTCGTTGTCGTGGACGCGGAGATCGTTCCGGAACCAAACAATGGA
JMSF028H12+           GGCTGCGTTGAGGCACTCGTTGTCGTGGACGCGGAGATCGTTCCGGAACCAAACAATGGA
                      ____________________________________________________________
consensus             GGCTGCGTTGAGGCACTCGTTGTCGTGGACGCGGAGATCGTTCCGGAACCAAACAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           AGCGCGGCGGAGGGCGGCGGCATTGGAGGGGTCAGAAGGGCGGAGAGGGTTCAAGGGGAC
JMSF028H12+           AGCGCGGCGGAGGGCGGCGGCATTGGAGGGGTCAGAAGGGCGGAGAGGGTTCAAGGGGAC
                      ____________________________________________________________
consensus             AGCGCGGCGGAGGGCGGCGGCATTGGAGGGGTCAGAAGGGCGGAGAGGGTTCAAGGGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           GGGGCTCTGAAGCGGGTTCGCGGAAACCGTGGACTTGAGCAATGATTTGGGAGGAGTGAG
JMSF028H12+           GGGGCTCTGAAGCGGGTTCGCGGAAACCGTGGACTTGAGCAATGATTTGGGAGGAGTGAG
                      ____________________________________________________________
consensus             GGGGCTCTGAAGCGGGTTCGCGGAAACCGTGGACTTGAGCAATGATTTGGGAGGAGTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           GGAGGCGGAGAGGGAGAGGTGAGAGAGAGAAGAGATCTGCGCGGGGATCTTGACCCTGCT
JMSF028H12+           GGAGGCGGAGAGGGAGAGGTGAGAGAGAGAAGAGATCTGCGCGGGGATCTTGACCCTGCT
                      ____________________________________________________________
consensus             GGAGGCGGAGAGGGAGAGGTGAGAGAGAGAAGAGATCTGCGCGGGGATCTTGACCCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           TGGGTGAGAACCAAAGAGGGTGGAGATTTTGTGGGCGGGGAGAATTGTGGACAAGGAGAG
JMSF028H12+           TGGGTGAGAACCAAAGAGGGTGGAGATTTTGTGGGCGGGGAGAATTGTGGACAAGGAGAG
JMSF011B02+                                                GGGAGAATTGTGGACAAGGAGAG
                      ____________________________________________________________
consensus             TGGGTGAGAACCAAAGAGGGTGGAGATTTTGTGGGCGGGGAGAATTGTGGACAAGGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           GGAGATTGAAGCCATGGGTAGGCGAAGCGTAGAGACGGCGGTTTGCTCTTCCGCCGCTTG
JMSF028H12+           GGAGATTGAAGCCATGGGTAGGCGAAGCGTAGAGACGGCGGTTTGCTCTTCCGCCGCTTG
JMSF011B02+           GGAGATTGAAGCCATGGGTAGGCGAAGCGTAGAGACGGCGGTTTGCTCTTCCGCCGCTTG
                      ____________________________________________________________
consensus             GGAGATTGAAGCCATGGGTAGGCGAAGCGTAGAGACGGCGGTTTGCTCTTCCGCCGCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           AGCTTCCTGATTCTCTTGTGGAAAGTTTTTAGCCTCCATTTTCAAGAATCAGTGAGAGAA
JMSF028H12+           AGCTTCCTGATTCTCTTGTGGAAAGTTTTTAGCCTCCATTTTCAAGAATCAGTGAGAGAA
JMSF011B02+           AGCTTCCTGATTCTCTTGTGGAAAGTTTTTAGCCTCCATTTTCAAGAATCAGTGAGAGAA
                      ____________________________________________________________
consensus             AGCTTCCTGATTCTCTTGTGGAAAGTTTTTAGCCTCCATTTTCAAGAATCAGTGAGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           AATGCAGCTTTTACAGATTCGAAAAGGAAAACAGCGATAAAACTGAGGACACAAAATCTT
JMSF028H12+           AATGCAGCTTTTACAGATTCGAAAAGGAAAACAGCGATAAAACTGAGGACACAAAATCTT
JMSF011B02+           AATGCAGCTTTTACAGATTCGAAAAGGAAAACAGCGATAAAACTGAGGGCACAAAATCTT
                      ____________________________________________________________
consensus             AATGCAGCTTTTACAGATTCGAAAAGGAAAACAGCGATAAAACTGAGGACACAAAATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023N10+           CTCCGACGACGATTTGGAGCTGCTGCCGGAGGCCTTTCTGGTTTATTGC           
JMSF028H12+           CTCCGACGACGATTTGGAGCTGCTGCCGGAGGCCTTTCTGGTTTATTGC           
JMSF011B02+           CTCCGACGACGATTTGGAGCTGCTGCCGGAGGCCTTTCTGGTTTATTGCAGTGTTTGGTC
                      ____________________________________________________________
consensus             CTCCGACGACGATTTGGAGCTGCTGCCGGAGGCCTTTCTGGTTTATTGCAGTGTTTGGTC