| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF037G20 | Sequence | 757 | 009232 (8) | ref|XP_009589405.1| | 8e-91 | PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Nicotiana to | |||||
| JMSF008B05 | Sequence | 251 | 009232 (8) | emb|CAJ13715.1| | 4e-13 | putative replication factor A [Capsicum chinense] | 424 | 013003 (8) | ref|XP_009590541.1| | 124 | PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis] |
| JMSF010P21 | Sequence | 256 | 009232 (8) | emb|CAJ13715.1| | 9e-14 | putative replication factor A [Capsicum chinense] | 702 | 009232 (8) | ref|XP_009589405.1| | 4e-91 | PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Nicotiana to |
| JMSF015B16 | Sequence | 347 | 009232 (8) | ref|XP_009770104.1| | 2e-30 | PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Nicotiana sy | 794 | 009232 (8) | ref|XP_009770104.1| | 3e-107 | PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Nicotiana sy |
| JMSF045C23 | Sequence | 716 | 009232 (8) | emb|CAJ13715.1| | 1e-92 | putative replication factor A [Capsicum chinense] | 716 | 009232 (8) | ref|XP_009589405.1| | 2e-91 | PREDICTED: replication protein A 32 kDa subunit B-like isoform X1 [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
rJMFF037G20- CGCATCATCCAATATGGCATTTCCCACTTCAGTC
____________________________________________________________
consensus CGCATCATCCAATATGGCATTTCCCACTTCAGTC
. : . : . : . : . : . :
rJMSF010P21- AATTCTCCCAACCTATTAAAATTCGAGTGGGCAACAAGT
rJMFF037G20- TAACAGAGCATAATATAGTTAAATTCTCCCAACCTATTAAAATTCGAGTGGGCAACAAGT
rJMSF045C23- AAATTCGAGTGGGCAACAAGT
rJMSF015B16- AATTCTCCCAACCTATTAAAATTCGAGTGGGCAACAAGT
____________________________________________________________
consensus TAACAGAGCATAATATAGTTAAATTCTCCCAACCTATTAAAATTCGAGTGGGCAACAAGT
. : . : . : . : . : . :
rJMSF010P21- TTTTTCTAGGAAGAAAAGCCTATACTAGTAAGAACCCAATGGTTCTGGTGAAGTGACCAA
rJMFF037G20- TTTTTCTAGGAAGAAAAGCCTATACTAGTAAGAACCCAATGGTTCTGGTGAAGTGACCAA
rJMSF045C23- TTTTTCTAGGAAGAAAAGCCTATACTAGTAAGAACCCAATGGTTCTGGTGAAGTGACCAA
rJMSF015B16- TTTTTCTAGGAAGAAAAGCCTATACTAGTAAGAACCCAATGGTTCTGGTGAAGTGACCAA
____________________________________________________________
consensus TTTTTCTAGGAAGAAAAGCCTATACTAGTAAGAACCCAATGGTTCTGGTGAAGTGACCAA
. : . : . : . : . : . :
rJMSF010P21- ATTTAAAATATATGACAACCATACATATGCAATGTTATCACCCATTACCGGTGGACTTGT
rJMFF037G20- ATTTAAAATATATGACAACCATACATATGCAATGTTATCACCCATTACCGGTGGACTTGT
rJMSF045C23- ATTTAAAATATATGACAACCATACATATGCAATGTTATCACCCATTACCGGTGGACTTGT
rJMSF015B16- ATTTAAAATATATGACAACCATACATATGCAATGTTATCACCCATTACCGGTGGACTTGT
____________________________________________________________
consensus ATTTAAAATATATGACAACCATACATATGCAATGTTATCACCCATTACCGGTGGACTTGT
. : . : . : . : . : . :
rJMSF010P21- AGTGACACTCATCTATTGTGGAGTAAACAAGCCCTTCTGACTCCAATGATTCCATCGCTT
rJMFF037G20- AGTGACACTCATCTATTGTGGAGTAAACAAGCCCTTCTGACTCCAATGATTCCATCGCTT
rJMSF045C23- AGTGACACTCATCTATTGTGGAGTAAACAAGCCCTTCTGACTCCAATGATTCCATCGCTT
rJMSF015B16- AGTGACACTCATCTATTGTGGAGTAAACAAGCCCTTCTGACTCCAATGATTCCATCGCTT
____________________________________________________________
consensus AGTGACACTCATCTATTGTGGAGTAAACAAGCCCTTCTGACTCCAATGATTCCATCGCTT
. : . : . : . : . : . :
rJMSF010P21- TTAAGAGCTTCTCAAGAGGAATGTTTAGTTGTTGAACAAGCTCATTGCGGTGAACCCCTT
rJMFF037G20- TTAAGAGCTTCTCAAGAGGAATGTTTAGTTGTTGAACAAGCTCATTGCGGTGAACCCCTT
rJMSF045C23- TTAAGAGCTTCTCAAGAGGAATGTTTAGTTGTTGAACAAGCTCATTGCGGTGAACCCCTT
rJMSF015B16- TTAAGAGCTTCTCAAGAGGAATGTTTAGTTGTTGAACAAGCTCATTGCGGTGAACCCCTT
____________________________________________________________
consensus TTAAGAGCTTCTCAAGAGGAATGTTTAGTTGTTGAACAAGCTCATTGCGGTGAACCCCTT
. : . : . : . : . : . :
rJMSF010P21- TTTCCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
rJMFF037G20- TTTCCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
rJMSF045C23- TTTCCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
rJMSF015B16- TTTCCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
JMSF045C23+ CCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
____________________________________________________________
consensus TTTCCTGAACAAGGCATTGGGGCTGATGCAAATAGCTTATGATCATCTTTTCTATGCCCG
. : . : . : . : . : . :
rJMSF010P21- TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
rJMFF037G20- TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
rJMSF045C23- TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
rJMSF015B16- TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
JMSF045C23+ TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
____________________________________________________________
consensus TAATTCCATCCACATTATACGCAGAAAAATTTGGTTGGGAAACTTGGTACCCCTTCATAG
. : . : . : . : . : . :
rJMSF010P21- GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
rJMFF037G20- GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
rJMSF045C23- GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
rJMSF015B16- GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
JMSF045C23+ GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
____________________________________________________________
consensus GTGTGTTCATAGCTGAATTAGGCACATGGGTGGCAGTATTAGCACTGTCTGGAAGTTTCC
. : . : . : . : . : . :
rJMSF010P21- GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
rJMFF037G20- GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
rJMSF045C23- GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
rJMSF015B16- GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
JMSF045C23+ GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
____________________________________________________________
consensus GTAACTTGGTGTTGTGGCAATAAGCATAAATAGCTTCAGCAAAGTGATGCGCAATCTCAT
. : . : . : . : . : . :
rJMSF010P21- TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
rJMFF037G20- TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
rJMSF045C23- TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
rJMSF015B16- TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
JMSF045C23+ TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
____________________________________________________________
consensus TATAATCATCAACAGGCCTGACAGAGTAAGTCATCAACTGTTTCTTGCCCTGGAAACCCT
. : . : . : . : . : . :
rJMSF010P21- TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
rJMFF037G20- TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
rJMSF045C23- TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
rJMSF015B16- TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
JMSF045C23+ TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
____________________________________________________________
consensus TCAAGTGTCCATGGACTTTAACATACATACCATTTGAGATAGCTGCCATTTCCGTTTTGT
. : . : . : . : . : . :
rJMSF010P21- CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
rJMFF037G20- CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
rJMSF045C23- CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
rJMSF015B16- CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
JMSF015B16+ ATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
JMSF045C23+ CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
____________________________________________________________
consensus CAAAGGGTTCATTCAGCCATCGATAGCAGTCAATGCGCCCTGTTCCATCATCAAGCACAA
. : . : . : . : . : . :
rJMSF010P21- AT
rJMFF037G20- ATG
rJMSF045C23- ATGAAAAAATCAGTGGCCCTATCAGCCATGTT
rJMSF015B16- ATG-AAAANTCAGTGGCCCTATCAGCCATGTTGAACACAATCCCCACTAGTTTCACATTA
JMSF015B16+ ATG-AAAAATCAGTGGCCCTATCAGCCATGTTGAACACAATCCCCACTAGTTTCACATTA
JMSF045C23+ ATG-AAAAATCAGTGGCCCTATCAGCCATGTTGAACACAATCCCCACTAGTTTCACATTA
JMSF008B05+ ACTAGTTTCACATTA
JMSF010P21+ CACTAGTTTCACATTA
____________________________________________________________
consensus ATG-AAAAATCAGTGGCCCTATCAGCCATGTTGAACACAATCCCCACTAGTTTCACATTA
. : . : . : . : . : . :
rJMSF015B16- TTCACGTCAACACCATTAACTAGAAAGTTTATCTTA
JMSF015B16+ TTCACGTCAACACCATTAACTAGAAAGTTTATCTNATCGTCGCTGGAATTTACAGCATCT
JMSF045C23+ TTCACGTCAACACCATTAACTAGAAAGTTTATCTTATCGTCGCTGGAATTTACAGCATCT
JMSF008B05+ TTCACGTCAACACCATTAACTAGAAAGTTTATCTTATCGTCGCTGGAATTTACAGCATCT
JMSF010P21+ TTCACGTCAACACCATTAACTAGAAAGTTTATCTTATCGTCGCTGGAATTTACAGCATCT
____________________________________________________________
consensus TTCACGTCAACACCATTAACTAGAAAGTTTATCTTATCGTCGCTGGAATTTACAGCATCT
. : . : . : . : . : . :
JMSF015B16+ ATTATCTGCTTCACTGTCAACGGAAGCAACGATTGGGAATCGCGACTCTTAGATGAAGAA
JMSF045C23+ ATTATCTGCTTCACTGTCAACGGAAGCAACGATTGGGAATCGCGACTCTTAGATGAAGAA
JMSF008B05+ ATTATCTGCTTCACTGTCAACGGAAGCAACGATTGGGAATCGCGACTCTTAGATGAAGAA
JMSF010P21+ ATTATCTGCTTCACTGTCAACGGAAGCAACGATTGGGAATCGCGACTCTTAGATGAAGAA
____________________________________________________________
consensus ATTATCTGCTTCACTGTCAACGGAAGCAACGATTGGGAATCGCGACTCTTAGATGAAGAA
. : . : . : . : . : . :
JMSF015B16+ TAGGAAGGATCGGTAGCAGTTTGAGTCGCCTGAGAAGGCATGAAACCGCCTCCGGCGAAG
JMSF045C23+ TAGGAAGGATCGGTAGCAGTTTGAGTCGCCTGAGAAGGCATGAAACCGCCTCCGGCGAAG
JMSF008B05+ TAGGAAGGATCGGTAGCAGTTTGAGTCGCCTGAGAAGGCATGAAACCGCCTCCGGCGAAG
JMSF010P21+ TAGGAAGGATCGGTAGCAGTTTGAGTCGCCTGAGAAGGCATGAAACCGCCTCCGGCGAAG
____________________________________________________________
consensus TAGGAAGGATCGGTAGCAGTTTGAGTCGCCTGAGAAGGCATGAAACCGCCTCCGGCGAAG
. : . : . : . : . : . :
JMSF015B16+ GCCGCGTTGCCGTCGAACGAAGCGCTCCCACCATACATCTCTTTTTGCAGTTG
JMSF045C23+ GCCGCGTTGCCGTCGAACGAAGCGCTCCCACCATACATCTCTTTTTGCAGTTG
JMSF008B05+ GCCGCGTTGCCGTCGAACGAAGCGCTCCCACCATACATCTCTTTTTGCAGTTG
JMSF010P21+ GCCGCGTTGCCGTCGAACGAAGCGCTCCCACCATACATCTCTTTTTGCAGTTGTCTCTTG
____________________________________________________________
consensus GCCGCGTTGCCGTCGAACGAAGCGCTCCCACCATACATCTCTTTTTGCAGTTGTCTCTTG