Contig 009230:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS145B10Sequence641009230 (3)emb|CDP20488.1|1e-28unnamed protein product [Coffea canephora]
JMSF010I13Sequence435009230 (3)662002918 (4)ref|XP_009796072.1|3e-46PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris]
JMSF032C02Sequence646009230 (3)ref|XP_004294722.1|2e-09PREDICTED: protein NETWORKED 4A isoform X1 [Fragaria vesca subsp. vesca]724002918 (4)ref|XP_009796072.1|8e-50PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS145B10+ GTTCAGCCA
                      ____________________________________________________________
consensus GTTCAGCCA
 
. : . : . : . : . : . :
JMFS145B10+ ACGACCTGTACATCCGGTAGAATTCCTCAACAAGATTGATCAACTCCGGCCTCTTCTGGT
                      ____________________________________________________________
consensus ACGACCTGTACATCCGGTAGAATTCCTCAACAAGATTGATCAACTCCGGCCTCTTCTGGT
 
. : . : . : . : . : . :
JMFS145B10+ AATACATTTCAGCCTTCTTAGCAAACGAGTCACCATCCTCTTCCACGAGCTTCAGCATCC
JMSF032C02+ TTCTTAGCAAACGAGTCACCATCNTCTTCCACGAGCTTCAGCATCC
                      ____________________________________________________________
consensus AATACATTTCAGCCTTCTTAGCAAACGAGTCACCATCCTCTTCCACGAGCTTCAGCATCC
 
. : . : . : . : . : . :
JMFS145B10+ GTTTTATATTCTGGTCCATCTTCTCGAGATTGTCTTGAAGCCACCTAGAGTTTTTGGGAC
JMSF032C02+ GTTTTATATTCTGGTCCATCTTCTCGAGATTGTCTTGAAGCCACCTAGAGTTTTTGGGAC
                      ____________________________________________________________
consensus GTTTTATATTCTGGTCCATCTTCTCGAGATTGTCTTGAAGCCACCTAGAGTTTTTGGGAC
 
. : . : . : . : . : . :
JMFS145B10+ TAATGTGGCTATCCCACCACCAGGAATGTGATTTTTTCGATTCTAACCTCCTCATGGCCT
JMSF032C02+ TAATGTGGCTATCCCACCACCAGGAATGTGATTTTTTCGATTCTAACCTCCTCATGGCCT
                      ____________________________________________________________
consensus TAATGTGGCTATCCCACCACCAGGAATGTGATTTTTTCGATTCTAACCTCCTCATGGCCT
 
. : . : . : . : . : . :
JMFS145B10+ TGCTTGACTTTGCCTGAAAATGGAGAGAAACGTCAATCCAGTCACACTACTTAGGCGCGA
JMSF032C02+ TGCTTGACTTTGCCTGAAAATGGAGAGAAACGTCAATCCAGTCACACTACTTAGGCGCGA
                      ____________________________________________________________
consensus TGCTTGACTTTGCCTGAAAATGGAGAGAAACGTCAATCCAGTCACACTACTTAGGCGCGA
 
. : . : . : . : . : . :
JMFS145B10+ TTTTTGCAACACTGCTTAAAGCCATCCGATAAATCAAGTCGGACGCCATTGAGCTGAACT
JMSF032C02+ TTTTTGCAACACTGCTTAAAGCCATCCGATAAATCAAGTCGGACGCCATTGAGCTGAACT
JMSF010I13+ CAAGTCGGACGCCATTGAGCTGAACT
                      ____________________________________________________________
consensus TTTTTGCAACACTGCTTAAAGCCATCCGATAAATCAAGTCGGACGCCATTGAGCTGAACT
 
. : . : . : . : . : . :
JMFS145B10+ TGCAATCTGACCAGAATTCTTGATTCAAAAGGGACGTATCAACAATCCTGCAGTGCTCGA
JMSF032C02+ TGCAATCTGACCAGAATTCTTGATTCAAAAGGGACGTATCAACAATCCTGCAGTGCTCGA
JMSF010I13+ TGCAATCTGACCAGAATTCTTGATTCAAAAGGGACGTATCAACAATCCTGCAGTGCTCGA
                      ____________________________________________________________
consensus TGCAATCTGACCAGAATTCTTGATTCAAAAGGGACGTATCAACAATCCTGCAGTGCTCGA
 
. : . : . : . : . : . :
JMFS145B10+ TCCAAACTGAGATCAGACGCGGGAGGCGAATCTCGGCGGAGAAATCTCAGGCCAAAGCTT
JMSF032C02+ TCCAAACTGAGATCAGACGCGGGAGGCGAATCTCGGCGGAGAAATCTCAGGCCAAAGCTT
JMSF010I13+ TCCAAACTGAGATCAGACGCGGGAGGCGAATCTCGGCGGAGAAATCTCAGGCCAAAGCTT
                      ____________________________________________________________
consensus TCCAAACTGAGATCAGACGCGGGAGGCGAATCTCGGCGGAGAAATCTCAGGCCAAAGCTT
 
. : . : . : . : . : . :
JMFS145B10+ CTGACAATCTTTTGGAATTGAAAGATTCTTGGTTGTATCACGGGGGTTTGAACTTTGAAG
JMSF032C02+ CTGACAATCTTTTGGAATTGAAAGATTCTTGGTTGTATCACGGGGGTTTGAACTTTGAAG
JMSF010I13+ CTGACAATCTTTTGGAATTGAAAGATTCTTGGTTGTATCACGGGGGTTTGAACTTTGAAG
                      ____________________________________________________________
consensus CTGACAATCTTTTGGAATTGAAAGATTCTTGGTTGTATCACGGGGGTTTGAACTTTGAAG
 
. : . : . : . : . : . :
JMFS145B10+ CTTGCAGTGAGGGCGAAGAGAGGTATAAGAAAGACAAAGAAAATGGGGATAACAATGGAG
JMSF032C02+ CTTGCAGTGAGGGCGAAGAGAGGTATAAGAAAGACAAAGAAAATGGGGATAACAATGGAG
JMSF010I13+ CTTGCAGTGAGGGCGAAGAGAGGTATAAGAAAGACAAAGAAAATGGGGATAACAATGGAG
                      ____________________________________________________________
consensus CTTGCAGTGAGGGCGAAGAGAGGTATAAGAAAGACAAAGAAAATGGGGATAACAATGGAG
 
. : . : . : . : . : . :
JMFS145B10+ AATCTAAAACTTGGGTTTATATATAAATATTG
JMSF032C02+ AATCTAAAACTTGGGTTTATATATAAATATTGTTTGGTTTGGAGTTATGTGAAATGTATG
JMSF010I13+ AATCTAAAACTTGGGTTTATATATAAATATTGTTTGGTTTGGAGTTATGTGAAATGTATG
                      ____________________________________________________________
consensus AATCTAAAACTTGGGTTTATATATAAATATTGTTTGGTTTGGAGTTATGTGAAATGTATG
 
. : . : . : . : . : . :
JMSF032C02+ AATCTGAAGAGTGAGGGAAAGTGGAGAGCAGGAGAAGAAGGATACAAATGGGAAAAG
JMSF010I13+ AATCTGAAGAGTGAGGGAAAGTGGAGAGCAGGAGAAGAAGGATACAAATGGGAAAAGGCC
                      ____________________________________________________________
consensus AATCTGAAGAGTGAGGGAAAGTGGAGAGCAGGAGAAGAAGGATACAAATGGGAAAAGGCC