Contig 009228:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS062D02Sequence611009228 (2)gb|KJB20628.1|2e-102hypothetical protein B456_003G156900 [Gossypium raimondii]
JMSF010E20Sequence454009228 (2)ref|XP_009601664.1|1e-54PREDICTED: DNA repair helicase XPB1-like [Nicotiana tomentosiformis]698005408 (2)ref|XP_009589972.1|6e-111PREDICTED: DNA repair helicase XPB1, partial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS062D02+                     GACCGACCTATAACTTCATCTCGAAGCAACGTTTTCAGTACCTCAGGAAA
                      ____________________________________________________________
consensus                       GACCGACCTATAACTTCATCTCGAAGCAACGTTTTCAGTACCTCAGGAAA
 
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JMFS062D02+           TGGAGATTCAATAAAATACCGGTTCTTCTTAAGCACGAGCTTCACTTTGCCATAGTTGGC
                      ____________________________________________________________
consensus             TGGAGATTCAATAAAATACCGGTTCTTCTTAAGCACGAGCTTCACTTTGCCATAGTTGGC
 
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JMFS062D02+           AGTAGAAGCATGTATAAAATCAATCATCTCTTTCGGAAGCTTAGTTTTTGACAATTTGCT
                      ____________________________________________________________
consensus             AGTAGAAGCATGTATAAAATCAATCATCTCTTTCGGAAGCTTAGTTTTTGACAATTTGCT
 
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JMFS062D02+           TAAAACAGATATTATAGTTTCAGTCTCCAAACCAACGGACACAGCCGCATACAAAGAGTG
JMSF010E20+                                     CCAAACCAACGGACACAGCCGCATACAAAGAGTG
                      ____________________________________________________________
consensus             TAAAACAGATATTATAGTTTCAGTCTCCAAACCAACGGACACAGCCGCATACAAAGAGTG
 
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JMFS062D02+           AGGTGTCAAATTGTACTCATGCATAGACTCCGGCCTGCAAACAGGTTCAGCAATGGCTAT
JMSF010E20+           AGGTGTCAAATTGTACTCATGCATAGACTCCGGCCTGCAAACAGGTTCAGCAATGGCTAT
                      ____________________________________________________________
consensus             AGGTGTCAAATTGTACTCATGCATAGACTCCGGCCTGCAAACAGGTTCAGCAATGGCTAT
 
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JMFS062D02+           GAGAAAGTCATATGCCTGTTTGTATAATGCTGAGAATGTTTCGAGGAAAATCCTACCATC
JMSF010E20+           GAGAAAGTCATATGCCTGTTTGTATAATGCTGAGAATGTTTCGAGGAAAATCCTACCATC
                      ____________________________________________________________
consensus             GAGAAAGTCATATGCCTGTTTGTATAATGCTGAGAATGTTTCGAGGAAAATCCTACCATC
 
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JMFS062D02+           AGCACAAGCCCACAAAGGGCGATTACCGTGATCAAGTTTGAGTTCAAGTTTCGTGAAATC
JMSF010E20+           AGCAAAAGCCCACAAAGGGCGATTACCGTGATCAAGTTTGAGTTCAAGTTTCGTGAAATC
                      ____________________________________________________________
consensus             AGCACAAGCCCACAAAGGGCGATTACCGTGATCAAGTTTGAGTTCAAGTTTCGTGAAATC
 
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JMFS062D02+           TCTTTTCTTCCCTTCACCCTCTCCATCACGAGGATCATCATTGATTTCATCTGGATAATA
JMSF010E20+           TCTTTTCTTCCCTTCACCCTCTCCATCACGAGGATCATCATTGATTTCATCTGGATAATA
                      ____________________________________________________________
consensus             TCTTTTCTTCCCTTCACCCTCTCCATCACGAGGATCATCATTGATTTCATCTGGATAATA
 
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JMFS062D02+           CGAATCATCTGTTTCAGCAGACCTAAATTCCTCCTTCGAGGAAAACTTGAACTTTTTGCT
JMSF010E20+           CGAATCATCTGTTTCAGCAGACCTAAATTCCTCCTTCGAGGAAAACTTGAACTTTTTGCT
                      ____________________________________________________________
consensus             CGAATCATCTGTTTCAGCAGACCTAAATTCCTCCTTCGAGGAAAACTTGAACTTTTTGCT
 
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JMFS062D02+           GGGTCGACCTTTATCACCGTGATGACCCATCGTTTCAACTTTGAGATCGAGCAACAATGG
JMSF010E20+           GGGTCGACCTTTATCACCGTGATGACCCATCGTTTCAACTTTGAGATCGAGCAACAATGG
                      ____________________________________________________________
consensus             GGGTCGACCTTTATCACCGTGATGACCCATCGTTTCAACTTTGAGATCGAGCAACAATGG
 
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JMFS062D02+           CTGTTTCCGTGCTGAGTGTCT                                       
JMSF010E20+           CTGTTTCCGTGCTGAGTGTCTGATCACAACAGTTATCTGCGTGAGTTATCGTCAAATGCC
                      ____________________________________________________________
consensus             CTGTTTCCGTGCTGAGTGTCTGATCACAACAGTTATCTGCGTGAGTTATCGTCAAATGCC