Contig 009220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS029A05Sequence599009220 (3)ref|XP_009803801.1|1e-46PREDICTED: SWI/SNF complex subunit SWI3C [Nicotiana sylvestris]
JMSF009C04Sequence337009220 (3)826001293 (3)ref|XP_011074832.1|1e-41PREDICTED: SWI/SNF complex subunit SWI3C [Sesamum indicum]
JMSF036F12Sequence541009220 (3)ref|XP_009803801.1|1e-28PREDICTED: SWI/SNF complex subunit SWI3C [Nicotiana sylvestris]746001293 (3)ref|XP_011074832.1|2e-38PREDICTED: SWI/SNF complex subunit SWI3C [Sesamum indicum]

Alignment

This contig is upended


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JMFS029A05+                       GGCCAGCACTTCCAANCTGCTTAATCACACCCCGACCTGGCAGTATCT
                      ____________________________________________________________
consensus                         GGCCAGCACTTCCAANCTGCTTAATCACACCCCGACCTGGCAGTATCT
 
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JMFS029A05+           GCGGAGGTGTGATCACATATGATCCACTCCCACTGCCTTCTCCTCGTTCATCAACCCCCA
JMSF036F12+                                                          TCATCAACCCCCA
                      ____________________________________________________________
consensus             GCGGAGGTGTGATCACATATGATCCACTCCCACTGCCTTCTCCTCGTTCATCAACCCCCA
 
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JMFS029A05+           ATGCCGGACTATCAGCTGGCACAGCTGAGATGGCCTGAAGTTGCCCGTACGAAATGTTCT
JMSF036F12+           ATGCCGGACTATCAGCTGGCACAGCTGAGATGGCCTGAAGTTGCCCGTACGAAATGTTCT
                      ____________________________________________________________
consensus             ATGCCGGACTATCAGCTGGCACAGCTGAGATGGCCTGAAGTTGCCCGTACGAAATGTTCT
 
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JMFS029A05+           CCAAAACAACCCTGGTCTGCCCCTGGCCCCTGCTCTCCCCACTTTGCCCGGCCATTTCCA
JMSF036F12+           CCAAAACAACCCTGGTCTGCCCCTGGCCCCTGCTCTCCCCACTTTGCCCGGCCATTTCCA
                      ____________________________________________________________
consensus             CCAAAACAACCCTGGTCTGCCCCTGGCCCCTGCTCTCCCCACTTTGCCCGGCCATTTCCA
 
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JMFS029A05+           GAGCTACCATATTCAGCACGGACGAATGGGGACCAATAACGGCACGCCTGATCACCGGAG
JMSF036F12+           GAGCTACCATATTCAGCACGGACGAATGGGGACCAATAACGGCACGCCTGATCACCGGAG
                      ____________________________________________________________
consensus             GAGCTACCATATTCAGCACGGACGAATGGGGACCAATAACGGCACGCCTGATCACCGGAG
 
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JMFS029A05+           GGAACTCACAGATTCTCTCCCCACCCTCAGCAAGCAGCTCACTCTCCTTAGCCGAGCCGG
JMSF036F12+           GGAACTCACAGATTCTCTCCCCACCCTCAGCAAGCAGCTCACTCTCCTTAGCCGAGCCGG
JMSF009C04+                                  CCCTCAGCAAGCAGCTCACTCTCCTTAGCCGAGCCGG
                      ____________________________________________________________
consensus             GGAACTCACAGATTCTCTCCCCACCCTCAGCAAGCAGCTCACTCTCCTTAGCCGAGCCGG
 
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JMFS029A05+           TCCGATCCGCGGAGCTGCTAGGGTTTAGGTGGTCCTCATCGATTTCCTGCTGCTGCTGGT
JMSF036F12+           TCCGATCCGCGGAGCTGCTAGGGTTTAGGTGGTCCTCATCGATTTCCTGCTGCTGCTGGT
JMSF009C04+           TCCGATCCGCGGAGCTGCTAGGGTTTAGGTGGTCCTCATCGATTTCCTGCTGCTGCTGGT
                      ____________________________________________________________
consensus             TCCGATCCGCGGAGCTGCTAGGGTTTAGGTGGTCCTCATCGATTTCCTGCTGCTGCTGGT
 
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JMFS029A05+           CCAGGTCTTCCTCTTCGTCCTCGTCCTCGAACCCTTCGTCTTCCTGCTGGGGCTTCGGTT
JMSF036F12+           CCAGGTCTTCCTCTTCGTCCTCGTCCTCGAACCCTTCGTCTTCCTGCTGGGGCTTCGGTT
JMSF009C04+           CCAGGTCTTCCTCTTCGTCCTCGTCCTCGAACCCTTCGTCTTCCTGCTGGGGCTTCGGTT
                      ____________________________________________________________
consensus             CCAGGTCTTCCTCTTCGTCCTCGTCCTCGAACCCTTCGTCTTCCTGCTGGGGCTTCGGTT
 
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JMFS029A05+           TTCGAGAAATCAAGGGCTTCCGCTTCTTCCATCTCGACCGCGCCTCTGAGGAAGCTGGCA
JMSF036F12+           TTCGAGAAATCAAGGGCTTCCGCTTCTTCCATCTCGACCGCGCCTCTGAGGAAGCTGGCA
JMSF009C04+           TTCGAGAAATCAAGGGCTTCCGCTTCTTCCATCTCGACCGCGCCTCTGAGGAAGCTGGCA
                      ____________________________________________________________
consensus             TTCGAGAAATCAAGGGCTTCCGCTTCTTCCATCTCGACCGCGCCTCTGAGGAAGCTGGCA
 
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JMFS029A05+           TTGCTAGCAATTTGAGGGGTTTAAGGAGAGAGATTTGTGGGGTCTGTGATTGGTGGCTTT
JMSF036F12+           TTGCTAGCAATTTGAGGGGTTTAAGGAGAGAGATTTGTGGGGTCTGTGATTGGTGGCTTT
JMSF009C04+           TTGCTAGCAATTTGAGGGGTTTAAGGAGAGAGATTTGTGGGGTCTGTGATTGGTGGCTTT
                      ____________________________________________________________
consensus             TTGCTAGCAATTTGAGGGGTTTAAGGAGAGAGATTTGTGGGGTCTGTGATTGGTGGCTTT
 
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JMFS029A05+           GGATGGAGTGA                                                 
JMSF036F12+           GGATGGAGTGAGGTTACAGAGGGAGAGGGAGAGGGGGGGAGAAAGAG             
JMSF009C04+           GGATGGAGTGAGGTTACAGAGGGAGAGGGAGAGGGGGGGAGAAAGAGAAGGGCTTCAACC
                      ____________________________________________________________
consensus             GGATGGAGTGAGGTTACAGAGGGAGAGGGAGAGGGGGGGAGAAAGAGAAGGGCTTCAACC