Contig 009219:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS032H11Sequence573009219 (5)
JMFS101D07Sequence596009219 (5)
JMFS122F01Sequence565009219 (5)
JMSF009B15Sequence222009219 (5)749009219 (5)

Alignment

This contig is upended


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rJMSF009B15-                                      ACCGCCATATTTCTTTTGCTTTATAAATTCTT
                      ____________________________________________________________
consensus                                         ACCGCCATATTTCTTTTGCTTTATAAATTCTT
 
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rJMSF009B15-          TTTTTGCCTCAGAGAAAGTCAACAACAGAAAATCAAATAAGGCCTTCAAAGAGAAATAAT
                      ____________________________________________________________
consensus             TTTTTGCCTCAGAGAAAGTCAACAACAGAAAATCAAATAAGGCCTTCAAAGAGAAATAAT
 
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rJMSF009B15-          ATAGGCCTGATATTAAAATCAACCAAAAATTGATATCAAGTACAAAAATCCTGAAACACA
                      ____________________________________________________________
consensus             ATAGGCCTGATATTAAAATCAACCAAAAATTGATATCAAGTACAAAAATCCTGAAACACA
 
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rJMSF009B15-          GTTCTGTCTTTTATTTATTTTTTTCTTCAATAATCGAAGACGATCAATCAAACCAAACTC
JMFS101D07+                                         TAATCGAAGACGATCAATCAAACCAAACTC
                      ____________________________________________________________
consensus             GTTCTGTCTTTTATTTATTTTTTTCTTCAATAATCGAAGACGATCAATCAAACCAAACTC
 
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rJMSF009B15-          GAACAGCCGTCGTCGGCAAAAGTCCCTCCAAAGCAGACTCCTCAACGATCCAACGGCAGA
JMFS101D07+           GAACAGCCGTCGTCGGCAAAAGTCCCTCCAAAGCAGACTCCTCAACGATCCAACGGCAGA
JMFS122F01+                       TCGGCAAAAGTCCCTCCAAAGCAGACTCCTCAACGATCCAACGGCAGA
JMFS032H11+                       TCGGCAAAAGTCCCTCCAAAGCAGACTCCTCAACGATCCAACGGCAGA
                      ____________________________________________________________
consensus             GAACAGCCGTCGTCGGCAAAAGTCCCTCCAAAGCAGACTCCTCAACGATCCAACGGCAGA
 
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rJMSF009B15-          ATTATCTCGAATTCCTATGGTTGATGTTGATCAAACCACAGAATTATCCTGAAACTGTAG
JMFS101D07+           ATTATCTCGAATTCCTATGGTTGATGTTGATCAAACCACAGAATTATCCTGAAACTGTAG
JMFS122F01+           ATTATCTCGAATTCCTATGGTTGATGTTGATCAAACCACAGAATTATCCTGAAACTGTAG
JMFS032H11+           ATTATCTCGAATTCCTATGGTTGATGTTGATCAAACCACAGAATTATCCTGAAACTGTAG
                      ____________________________________________________________
consensus             ATTATCTCGAATTCCTATGGTTGATGTTGATCAAACCACAGAATTATCCTGAAACTGTAG
 
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rJMSF009B15-          TGCTGATGAAGCCTCAGCGACGGTCAAATCAAGCCACAGGATCTTCAAACTCGGAAAGGC
JMFS101D07+           TGCTGATGAAGCCTCAGCGACGGTCAAATCAAGCCACAGGATCTTCAAACTCGGAAAGGC
JMFS122F01+           TGCTGATGAAGCCTCAGCGACGGTCAAATCAAGCCACAGGATCTTCAAACTCGGAAAGGC
JMFS032H11+           TGCTGATGAAGCCTCAGCGACGGTCAAATCAAGCCACAGGATCTTCAAACTCGGAAAGGC
                      ____________________________________________________________
consensus             TGCTGATGAAGCCTCAGCGACGGTCAAATCAAGCCACAGGATCTTCAAACTCGGAAAGGC
 
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rJMSF009B15-          CGAAGCAAAAGGCCTCTTCTTGCTATGCGGAAACGTCACCAGAATCAAACTCCTGAAGCG
JMFS101D07+           CGAAGCAAAAGGCCTCTTCTTGCTATGCGGAAACGTCACCAGAATCAAACTCCTGAAGCG
JMFS122F01+           CGAAGCAAAAGGCCTCTTCTTGCTATGCGGAAACGTCACCAGAATCAAACTCCTGAAGCG
JMFS032H11+           CGAAGCAAAAGGCCTCTTCTTGCTATGCGGAAACGTCACCAGAATCAAACTCCTGAAGCG
                      ____________________________________________________________
consensus             CGAAGCAAAAGGCCTCTTCTTGCTATGCGGAAACGTCACCAGAATCAAACTCCTGAAGCG
 
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rJMSF009B15-          AAGAATCTTAAGCCGGCTGTCAAATCGAATCCAATCTTCTCAAGCCTGTTCGATGACGGA
JMFS101D07+           AAGAATCTTAAGCCGGCTGTCAAATCGAATCCAATCTTCTCAAGCCTGTTCGATGACGGA
JMFS122F01+           AAGAATCTTAAGCCGGCTGTCAAATCGAATCCAATCTTCTCAAGCCTGTTCGATGACGGA
JMFS032H11+           AAGAATCTTAAGCCGGCTGTCAAATCGAATCCAATCTTCTCAAGCCTGTTCGATGACGGA
                      ____________________________________________________________
consensus             AAGAATCTTAAGCCGGCTGTCAAATCGAATCCAATCTTCTCAAGCCTGTTCGATGACGGA
 
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rJMSF009B15-          AAACGCCAATAACCTCGATCGATTAAAAGAAAACACCGTGAGCATGCCGGAGAACACAGA
JMFS101D07+           AAACGCCAATAACCTCGATCGATTAAAAGAAAACACCGTGAGCATGCCGGAGAACACAGA
JMFS122F01+           AAACGCCAATAACCTCGATCGATTAAAAGAAAACACCGTGAGCATGCCGGAGAACACAGA
JMFS032H11+           AAACGCCAATAACCTCGATCGATTAAAAGAAAACACCGTGAGCATGCCGGAGAACACAGA
                      ____________________________________________________________
consensus             AAACGCCAATAACCTCGATCGATTAAAAGAAAACACCGTGAGCATGCCGGAGAACACAGA
 
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rJMSF009B15-          TTCCCCACGAACAAAAAACGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
JMFS101D07+           TTCCCCACGAACAAAAAACGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
JMFS122F01+           TTCCCCACGAACAAAAAACGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
JMFS032H11+           TTCCCCACGAACAAAAAACGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
JMSF009B15+                             CGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
                      ____________________________________________________________
consensus             TTCCCCACGAACAAAAAACGCGAACTCAAACTGGTTCTATATACACCTTAGAATCCAGAG
 
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rJMSF009B15-          TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
JMFS101D07+           TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
JMFS122F01+           TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
JMFS032H11+           TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
JMSF009B15+           TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
                      ____________________________________________________________
consensus             TTCGTCGCAGAAACAAACGATGGAACACGAATGTATCAGATCAATTAGGCTTCCGCTGTA
 
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rJMSF009B15-          TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAA           
JMFS101D07+           TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAACTTCGATATGA
JMFS122F01+           TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAACTTCGATATGA
JMFS032H11+           TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAACTTCGATATGA
JMSF009B15+           TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAACTTCGATATGA
                      ____________________________________________________________
consensus             TATATCAGTTTTTGAGTGCAACGAATCGAGCTAGGGTTAGGGTTCGAAACTTCGATATGA
 
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JMFS101D07+           GGAGAGGAACAGGAAGCTGGAGAGAG                                  
JMFS122F01+           GGAGAGGAACAGGAAGCTGGAGAGAGAAATGAATCCT                       
JMFS032H11+           GGAGAGGAACAGGAAGCTGGAGAGAGAAATGAATCCTTCGATAAG               
JMSF009B15+           GGAGAGGAACAGGAAGCTGGAGAGAGAAATGAATCCTTCGATAAGTGGATTATCGGTTTC
                      ____________________________________________________________
consensus             GGAGAGGAACAGGAAGCTGGAGAGAGAAATGAATCCTTCGATAAGTGGATTATCGGTTTC