Contig 009217:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016E08Sequence580009217 (2)ref|XP_009589258.1|4e-80PREDICTED: F-box protein SKIP23-like [Nicotiana tomentosiformis]
JMSF008N10Sequence320009217 (2)ref|XP_009589258.1|3e-27PREDICTED: F-box protein SKIP23-like [Nicotiana tomentosiformis]763020302ref|XP_009778088.1|2e-67PREDICTED: F-box protein SKIP23-like [Nicotiana sylvestris] ref|XP_009778089.1|

Alignment

This contig is upended


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JMFN016E08+             TCGCCATGGCGGTGAAGTCCGGTTGGAGCAGAGGATACCCGGAGAGGACAACCTTTTT
                      ____________________________________________________________
consensus               TCGCCATGGCGGTGAAGTCCGGTTGGAGCAGAGGATACCCGGAGAGGACAACCTTTTT
 
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JMFN016E08+           GATAAACGTGTCGCGCATTTCTTTCAAACTGCAGGTATGGATCTCGCCCTCGGATCGGAG
                      ____________________________________________________________
consensus             GATAAACGTGTCGCGCATTTCTTTCAAACTGCAGGTATGGATCTCGCCCTCGGATCGGAG
 
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JMFN016E08+           GGTGTATTCACGGCCGACGTTGTAGAAATTGAAATCGAGGACGTTAGGGAATTGGGAGAG
                      ____________________________________________________________
consensus             GGTGTATTCACGGCCGACGTTGTAGAAATTGAAATCGAGGACGTTAGGGAATTGGGAGAG
 
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JMFN016E08+           CGGCGGGAGATTGAGTTTGGCTCGGGTGAGCGGGTTGACGATGAAGACCGACGGCGACTC
                      ____________________________________________________________
consensus             CGGCGGGAGATTGAGTTTGGCTCGGGTGAGCGGGTTGACGATGAAGACCGACGGCGACTC
 
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JMFN016E08+           GTCGAGGATGACGAGCCAGCCGTGGGAGGAGCCACAGCGGCGGCGGCGGTTGGAGGCCTC
JMSF008N10+                                                                      C
                      ____________________________________________________________
consensus             GTCGAGGATGACGAGCCAGCCGTGGGAGGAGCCACAGCGGCGGCGGCGGTTGGAGGCCTC
 
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JMFN016E08+           CGGGAGGATGAGGAAGTGAAACCTATTATCCAGAGGACTGAAGAACCCTAGCCTGCTGGA
JMSF008N10+           CGGGAGGATGAGGAAGTGAAACCTATTATCCAGAGGACTGAAGAACCCTAGCCTGCTGGA
                      ____________________________________________________________
consensus             CGGGAGGATGAGGAAGTGAAACCTATTATCCAGAGGACTGAAGAACCCTAGCCTGCTGGA
 
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JMFN016E08+           TTGCCTCTGCGATAGCATTAGCCATGGGAATTGGCAGGGAAGATGCGTCGGCGTCTTCAA
JMSF008N10+           TTGCCTCTGCGATAGCATTAGCCATGGGAATTGGCAGGGAAGATGCGTCGGCGTCTTCAA
                      ____________________________________________________________
consensus             TTGCCTCTGCGATAGCATTAGCCATGGGAATTGGCAGGGAAGATGCGTCGGCGTCTTCAA
 
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JMFN016E08+           AGCCGATCCCCTCCAGCTCGCGCATACGGCTCGGAATCGGACATAATCTTTGTGGATTCG
JMSF008N10+           AGCCGATCCCCTCCAGCTCGCGCATACGGCTCGGAATCGGACATAATCTTTGTGGATTCG
                      ____________________________________________________________
consensus             AGCCGATCCCCTCCAGCTCGCGCATACGGCTCGGAATCGGACATAATCTTTGTGGATTCG
 
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JMFN016E08+           AAGCTTTTTGGCTATGGAGTCTAGGAGCTCCGGCGGGAGATTCGCCCAATCAGGGTCAAC
JMSF008N10+           AAGCTTTTTGGCTATGGAGTCTAGGAGCTCCGGCGGGAGATTCGCCCAATCAGGGTCAAC
                      ____________________________________________________________
consensus             AAGCTTTTTGGCTATGGAGTCTAGGAGCTCCGGCGGGAGATTCGCCCAATCAGGGTCAAC
 
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JMFN016E08+           GGACATGTTTTTGCCTCGTTAATTTTCAACGAGGCCACGCCC                  
JMSF008N10+           GGACATGTTTTTGCCTCGTTAATTTTCAACGAGGCCACGCCCGCACGCAATCCCATCTCC
                      ____________________________________________________________
consensus             GGACATGTTTTTGCCTCGTTAATTTTCAACGAGGCCACGCCCGCACGCAATCCCATCTCC