Contig 009214:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008J16Sequence361009214 (3)728012437 (14)ref|XP_009614370.1|2e-67PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Nicotiana tomentosifo
JMSF028D14Sequence638009214 (3)ref|XP_011095678.1|8e-08PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic738021484ref|XP_011095678.1|8e-34PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic
JMSF033M09Sequence699009214 (3)ref|XP_002269984.1|8e-16PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic688015090ref|XP_011095678.1|3e-27PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033M09+                             CTTGGTTGCTTTATTGAGCTTATTGTGGTGACAAAGGGCATA
                      ____________________________________________________________
consensus                               CTTGGTTGCTTTATTGAGCTTATTGTGGTGACAAAGGGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+                              GTTAAATCAGGGTTATAACCCTTCTTTACCATATCCTCTAA
JMSF033M09+           AACCAGGTGGGTGGCTTGGGTTAAATCAGGGTTATAACCCTTCTTTACCATATCCTCTAA
                      ____________________________________________________________
consensus             AACCAGGTGGGTGGCTTGGGTTAAATCAGGGTTATAACCCTTCTTTACCATATCCTCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           ATATATAACTGCATCATTTAGCTTATGGTCCATGATTCTTTTGTCATTACTGGGAGACTT
JMSF033M09+           ATATATAACTGCATCATTTAGCTTATGGTCCATGATTCTTTTGTCATTACTGGGAGACTT
                      ____________________________________________________________
consensus             ATATATAACTGCATCATTTAGCTTATGGTCCATGATTCTTTTGTCATTACTGGGAGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           CTTCCAGTTTGGAAGAACAAAAACACCATCTTTCACAGCTAAGTCACTCTGATGGTTAGA
JMSF033M09+           CTTCCAGTTTGGAAGAACAAAAACACCATCTTTCACAGCTAAGTCACTCTGATGGTTAGA
                      ____________________________________________________________
consensus             CTTCCAGTTTGGAAGAACAAAAACACCATCTTTCACAGCTAAGTCACTCTGATGGTTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           AAAATGATTAATTCCAGTATGGGCAACGGCTAATAGTCTAGAAAAGCTCTTCTTATGCGG
JMSF033M09+           AAAATGATTAATTCCAGTATGGGCAACGGCTAATAGTCTAGAAAAGCTCTTCTTATGCGG
                      ____________________________________________________________
consensus             AAAATGATTAATTCCAGTATGGGCAACGGCTAATAGTCTAGAAAAGCTCTTCTTATGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           CAAGGGAGCATAAAGTTTCGGCCTTTCCGGCAAGAATTCTGATGGTGGGGTTAGGGTTCT
JMSF033M09+           CAAGGGAGCATAAAGTTTCGGCCTTTCCGGCAAGAATTCTGATGGTGGGGTTAGGGTTCT
JMSF008J16+                                                                      T
                      ____________________________________________________________
consensus             CAAGGGAGCATAAAGTTTCGGCCTTTCCGGCAAGAATTCTGATGGTGGGGTTAGGGTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           TAAAGGAGTTGGTGAATTTATAAGTACAGACATGAATTGAAATGTTTCGAGAAGAAAATG
JMSF033M09+           TAAAGGAGTTGGTGAATTTATAAGTACAGACATGAATTGAAATGTTTCGAGAAGAAAATG
JMSF008J16+           TAAAGGAGTTGGTGAATTTATAAGTACAGACATGAATTGAAATGTTTCGAGAAGAAAATG
                      ____________________________________________________________
consensus             TAAAGGAGTTGGTGAATTTATAAGTACAGACATGAATTGAAATGTTTCGAGAAGAAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           ACAGAAATTAAAAACAATTCCTTATCTCCTAAATGTGGAAAAAAGACAGAAACTCCATGT
JMSF033M09+           ACAGAAATTAAAAACAATTCCTTATCTCCTAAATGTGGAAAAAAGACAGAAACTCCATGT
JMSF008J16+           ACAGAAATTAAAAACAATTCCTTATCTCCTAAATGTGGAAAAAAGACAGAAACTCCATGT
                      ____________________________________________________________
consensus             ACAGAAATTAAAAACAATTCCTTATCTCCTAAATGTGGAAAAAAGACAGAAACTCCATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           GAAGTGAGGAAAGAAAACCCAGAAATGGGTGTGGGGAAGAAAGGTGGTTGAGCATACAAA
JMSF033M09+           GAAGTGAGGAAAGAAAACCCAGAAATGGGTGTGGGGAAGAAAGGTGGTTGAGCATACAAA
JMSF008J16+           GAAGTGAGGAAAGAAAACCCAGAAATGGGTGTGGGGAAGAAAGGTGGTTGAGCATACAAA
                      ____________________________________________________________
consensus             GAAGTGAGGAAAGAAAACCCAGAAATGGGTGTGGGGAAGAAAGGTGGTTGAGCATACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           GCTTAAAAGAAACAGGAAATGAAGATGAAACAGAAATGGAGCTAAGGGGGAACATACAAG
JMSF033M09+           GCTTAAAAGAAACAGGAAATGAAGATGAAACAGAAATGGAGCTAAGGGGGAACATACAAG
JMSF008J16+           GCTTAAAAGAAACAGGAAATGAAGATGAAACAGAAATGGAGCTAAGGGGGAACATACAAG
                      ____________________________________________________________
consensus             GCTTAAAAGAAACAGGAAATGAAGATGAAACAGAAATGGAGCTAAGGGGGAACATACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           AAGTGTGTTTGCAATCACTGATTTGGGTTTGCTTTGTCTTCCCCACTCCCCTTTATTTTA
JMSF033M09+           AAGTGTGTTTGCAATCACTGATTTGGGTTTGCTTTGTCTTCCCCACTCCCCTTTATTTTA
JMSF008J16+           AAGTGTGTTTGCAATCACTGATTTGGGTTTGCTTTGTCTTCCCCACTCCCCTTTATTTTA
                      ____________________________________________________________
consensus             AAGTGTGTTTGCAATCACTGATTTGGGTTTGCTTTGTCTTCCCCACTCCCCTTTATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028D14+           TCTTCTCTCTTCTTTCTTCTCCAACTTCAGAAGACGATTGGCTGTAATCTCTCGAC    
JMSF033M09+           TCTTCTCTCTTCTTTCTTCTCCAACTTCAGAAGACGATTGGCTGTAATCTCTCGAC    
JMSF008J16+           TCTTCTCTCTTCTTTCTTCTCCAACTTCAGAAGACGATTGGCTGTAATCTCTCGACTCTC
                      ____________________________________________________________
consensus             TCTTCTCTCTTCTTTCTTCTCCAACTTCAGAAGACGATTGGCTGTAATCTCTCGACTCTC