| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008I02 | Sequence | 392 | 009211 (4) | ref|XP_009778031.1| | 1e-28 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl | 780 | 007081 (5) | ref|XP_009778031.1| | 8e-68 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF017F07 | Sequence | 276 | 009211 (4) | ref|XP_009599882.1| | 3e-07 | PREDICTED: embryogenesis-associated protein EMB8-like [Nicotiana tomentosiformi | 782 | 007081 (5) | ref|XP_009778031.1| | 2e-52 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF025E23 | Sequence | 686 | 009211 (4) | ref|XP_009778031.1| | 2e-93 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl | 747 | 007081 (5) | ref|XP_009778031.1| | 5e-46 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF031M23 | Sequence | 631 | 009211 (4) | ref|XP_009778032.1| | 2e-70 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X2 [Nicotiana syl | 631 | 007081 (5) | ref|XP_009778031.1| | 2e-30 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
JMSF025E23+ CCGTCCATCCAGCATT
____________________________________________________________
consensus CCGTCCATCCAGCATT
. : . : . : . : . : . :
JMSF025E23+ ATAAAAGCGTTCAGAAGTTATAGATACACCCCCAAGGCCACGATGATTGCAGACTACAAC
____________________________________________________________
consensus ATAAAAGCGTTCAGAAGTTATAGATACACCCCCAAGGCCACGATGATTGCAGACTACAAC
. : . : . : . : . : . :
JMSF025E23+ TCTCCAACCATGTTTAGCCATCTTGAAAACAAGATGTTTCACATAAGCAGAATCAGAGTC
JMSF031M23+ AACAAGATGTTTCACATAAGCAGAATCAGAGTC
____________________________________________________________
consensus TCTCCAACCATGTTTAGCCATCTTGAAAACAAGATGTTTCACATAAGCAGAATCAGAGTC
. : . : . : . : . : . :
JMSF025E23+ ACTTGTTAAGCCAGGTACCACTATCAGGATTGGGCTTTTATCATTGCTGTAAACTCCACC
JMSF031M23+ ACTTGTTAAGCCAGGTACCACTATCAGGATTGGGCTTTTATCATTGCTGTAAACTCCACC
____________________________________________________________
consensus ACTTGTTAAGCCAGGTACCACTATCAGGATTGGGCTTTTATCATTGCTGTAAACTCCACC
. : . : . : . : . : . :
JMSF025E23+ ACAATTTTTTATATATGATGACCTAACATCCTCAATGGTCAGCCAATCCAATGCTATAGT
JMSF031M23+ ACAATTTTTTATATATGATGACCTAACATCCTCAATGGTCAGCCAATCCAATGCTATAGT
____________________________________________________________
consensus ACAATTTTTTATATATGATGACCTAACATCCTCAATGGTCAGCCAATCCAATGCTATAGT
. : . : . : . : . : . :
JMSF025E23+ TCCACCATCAGGTGTATGAAATATCTTTCTTCTATAGTTGCAGACTGGAGGCATCCCAAA
JMSF031M23+ TCCACCATCAGGTGTATGAAATATCTTTCTTCTATAGTTGCAGACTGGAGGCATCCCAAA
____________________________________________________________
consensus TCCACCATCAGGTGTATGAAATATCTTTCTTCTATAGTTGCAGACTGGAGGCATCCCAAA
. : . : . : . : . : . :
JMSF025E23+ GAAATGTAAGAAGGTAGTCTGTAAATGCGGACTACACAACCATGGAGTAGACGAAAACCT
JMSF031M23+ GAAATGTAAGAAGGTAGTCTGTAAATGCGGACTACACAACCATGGAGTAGACGAAAACCT
JMSF008I02+ GGACTACACAACCATGGAGTAGACGAAANCCT
____________________________________________________________
consensus GAAATGTAAGAAGGTAGTCTGTAAATGCGGACTACACAACCATGGAGTAGACGAAAACCT
. : . : . : . : . : . :
JMSF025E23+ GCCGTGAAGAATTCTACACTTGGAAACAACTTCCTGATAGAGCTGAGAGCAAGGGCTGAA
JMSF031M23+ GCCGTGAAGAATTCTACACTTGGAAACAACTTCCTGATAGAGCTGAGAGCAAGGGCTGAA
JMSF008I02+ GCCGTGAAGAATTCTACACTTGGAAACAACTTCCTGATAGAGCTGAGAGCAAGGGCTGAA
____________________________________________________________
consensus GCCGTGAAGAATTCTACACTTGGAAACAACTTCCTGATAGAGCTGAGAGCAAGGGCTGAA
. : . : . : . : . : . :
JMSF025E23+ GGTCAAGGACACGGTTTGACCTCTAAATCCGGCGAGCAAATCTCGGAAGAAATGGATTTC
JMSF031M23+ GGTCAAGGACACGGTTTGACCTCTAAATCCGGCGAGCAAATCTCGGAAGAAATGGATTTC
JMSF017F07+ CTAANTCCGGCGAGCAAATCTCGGAAGAAATGGATTTC
JMSF008I02+ GGTCAAGGACACGGTTTGACCTCTAAATCCGGCGAGCAAATCTCGGAAGAAATGGATTTC
____________________________________________________________
consensus GGTCAAGGACACGGTTTGACCTCTAAATCCGGCGAGCAAATCTCGGAAGAAATGGATTTC
. : . : . : . : . : . :
JMSF025E23+ GATGAAATGATAGAGAAAGAAGATAAGGATGGAGAGAAAGGCAAATAGATAGTGAGATAT
JMSF031M23+ GATGAAATGATAGAGAAAGAAGATAAGGATGGAGAGAAAGGCAAATAGATAGTGAGATAT
JMSF017F07+ GATGAAATGATAGAGAAAGAAGATAAGGATGGAGAGAAAGGCAAATAGATAGTGAGATAT
JMSF008I02+ GATGAAATGATAGAGAAAGAAGATAAGGATGGAGAGAAAGGCAAATAGATAGTGAGATAT
____________________________________________________________
consensus GATGAAATGATAGAGAAAGAAGATAAGGATGGAGAGAAAGGCAAATAGATAGTGAGATAT
. : . : . : . : . : . :
JMSF025E23+ GGGAATCAACGAAGCCGCTCTGAGCAAAAGCTCGTACGGCGGATGAGAAACTGAGTCTAA
JMSF031M23+ GGGAATCAACGAAGCCGCTCTGAGCAAAAGCTCGTACGGCGGATGAGAAACTGAGTCTAA
JMSF017F07+ GGGAATCAACGAAGCCGCTCTGAGCAAAAGCTCGTACGGCGGATGAGAAACTGAGTCTAA
JMSF008I02+ GGGAATCAACGAAGCCGCTCTGAGCAAAAGCTCGTACGGCGGATGAGAAACTGAGTCTAA
____________________________________________________________
consensus GGGAATCAACGAAGCCGCTCTGAGCAAAAGCTCGTACGGCGGATGAGAAACTGAGTCTAA
. : . : . : . : . : . :
JMSF025E23+ GCAACCATCCATGGATGTCGTCCGCCGCGATGGGGTGGCGCCGGGAGTGTGGGGACGAGT
JMSF031M23+ GCAACCATCCATGGATGTCGTCCGCCGCGATGGGGTGGCGCCGGGAGTGTGGGGACGAGT
JMSF017F07+ GCAACCATCCATGGATGTCGTCCGCCGCGATGGGGTGGCGCCGGGAGTGTGGGGACGAGT
JMSF008I02+ GCAACCATCCATGGATGTCGTCCGCCGCGATGGGGTGGCGCCGGGAGTGTGGGGACGAGT
____________________________________________________________
consensus GCAACCATCCATGGATGTCGTCCGCCGCGATGGGGTGGCGCCGGGAGTGTGGGGACGAGT
. : . : . : . : . : . :
JMSF025E23+ ATGCACTG
JMSF031M23+ ATGCACTGTGTAGAGTGTAGACCAATCAGAATCCCGTTTTCTATGGTCGGAGCCGT
JMSF017F07+ ATGCACTGTGTAGAGTGTAGACCAATCAGAATCCCGTTTTCTATGGTCGGAGCCGT
JMSF008I02+ ATGCACTGTGTAGAGTGTAGACCAATCAGAATCCCGTTTTCTATGGTCGGAGCCGTTCTC
____________________________________________________________
consensus ATGCACTGTGTAGAGTGTAGACCAATCAGAATCCCGTTTTCTATGGTCGGAGCCGTTCTC