Contig 009208:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012D17Sequence535009208 (5)ref|XP_006359789.1|5e-50PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero777013728 (4)ref|XP_009624770.1|1e-74PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi
JMFF026I15Sequence606009208 (5)ref|XP_006359789.1|4e-67PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero730013728 (4)ref|XP_009776050.1|1e-61PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana sylvestri
JMFF037C12Sequence568009208 (5)ref|XP_006359789.1|9e-61PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero
JMFS088F03Sequence627009208 (5)ref|XP_006359789.1|4e-75PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero
JMSF008D09Sequence244009208 (5)769013728 (4)ref|XP_009624770.1|2e-82PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi

Alignment

This contig is upended


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JMFS088F03+                            CTCGAATTGACTCCAAGGCGTGGTCCTTAGTGAGCCAGACGGA
JMFF026I15+                                                            AGCCAGACGGA
                      ____________________________________________________________
consensus                              CTCGAATTGACTCCAAGGCGTGGTCCTTAGTGAGCCAGACGGA
 
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JMFF037C12+                         ACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
JMFS088F03+           GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
JMFF026I15+           GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
                      ____________________________________________________________
consensus             GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
 
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JMFF037C12+           GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFS088F03+           GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFF026I15+           GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFF012D17+           GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
                      ____________________________________________________________
consensus             GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
 
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JMFF037C12+           TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFS088F03+           TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFF026I15+           TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFF012D17+           TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
                      ____________________________________________________________
consensus             TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
 
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JMFF037C12+           AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFS088F03+           AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFF026I15+           AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFF012D17+           AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
                      ____________________________________________________________
consensus             AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
 
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JMFF037C12+           CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFS088F03+           CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFF026I15+           CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFF012D17+           CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
                      ____________________________________________________________
consensus             CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
 
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JMFF037C12+           GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFS088F03+           GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFF026I15+           GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFF012D17+           GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMSF008D09+                                                                   GGCG
                      ____________________________________________________________
consensus             GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
 
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JMFF037C12+           TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFS088F03+           TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFF026I15+           TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFF012D17+           TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMSF008D09+           TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
                      ____________________________________________________________
consensus             TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
 
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JMFF037C12+           CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFS088F03+           CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFF026I15+           CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFF012D17+           CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMSF008D09+           CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
                      ____________________________________________________________
consensus             CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
 
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JMFF037C12+           GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFS088F03+           GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFF026I15+           GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFF012D17+           GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMSF008D09+           GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
                      ____________________________________________________________
consensus             GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
 
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JMFF037C12+           GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGAT                  
JMFS088F03+           GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGG                
JMFF026I15+           GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGC     
JMFF012D17+           GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGC     
JMSF008D09+           GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGCGGAAC
                      ____________________________________________________________
consensus             GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGCGGAAC