Contig 009205:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008B17Sequence275009205 (2)ref|XP_009796010.1|9e-21PREDICTED: kiwellin-like [Nicotiana sylvestris]760009205 (2)gb|KJB56195.1|1e-96hypothetical protein B456_009G109400 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF008B17-                        CTTTATTGAAAATTAGACTTGTTGGTGACACTTTATTGTTATGTTA
                      ____________________________________________________________
consensus                           CTTTATTGAAAATTAGACTTGTTGGTGACACTTTATTGTTATGTTA
 
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rJMSF008B17-          CCATATTTTGATCACACAAATAAATGATCATTAGGCCATGGACCATGTAACAGAGACTCG
                      ____________________________________________________________
consensus             CCATATTTTGATCACACAAATAAATGATCATTAGGCCATGGACCATGTAACAGAGACTCG
 
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rJMSF008B17-          GCCCAAATCTTGATTTAGGCCCAGAGCATTCCAAACCGCCGCCGACCCATCAACGATGTT
                      ____________________________________________________________
consensus             GCCCAAATCTTGATTTAGGCCCAGAGCATTCCAAACCGCCGCCGACCCATCAACGATGTT
 
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rJMSF008B17-          GTTATCGCACGGCACCTGTCCTGCATGCTCATCGTCGCATCCGTGCATGGAGTCACACTC
                      ____________________________________________________________
consensus             GTTATCGCACGGCACCTGTCCTGCATGCTCATCGTCGCATCCGTGCATGGAGTCACACTC
 
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rJMSF008B17-          ATCCACCACCTTCGCCGTCGTGCTCCTCCCGTTACTCGCCCTGATACGAATCATCTTCCC
                      ____________________________________________________________
consensus             ATCCACCACCTTCGCCGTCGTGCTCCTCCCGTTACTCGCCCTGATACGAATCATCTTCCC
 
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rJMSF008B17-          GCACCTAGACCCTCCAGCGTACCACCCGGTAGACAACGCCACCACTCTTTCGTTATTGTC
                      ____________________________________________________________
consensus             GCACCTAGACCCTCCAGCGTACCACCCGGTAGACAACGCCACCACTCTTTCGTTATTGTC
 
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rJMSF008B17-          GTGGTACTGCTCGTCGCATTCGGATGGAGCGCCACCATCGCCGCCTTCACTGAAGTTGTT
                      ____________________________________________________________
consensus             GTGGTACTGCTCGTCGCATTCGGATGGAGCGCCACCATCGCCGCCTTCACTGAAGTTGTT
 
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rJMSF008B17-          GAGGGTGAGTATGGCGGGCGTAGAGGACTTCACCGGAGGCGAGCACCGGTAGGTAGGCTT
                      ____________________________________________________________
consensus             GAGGGTGAGTATGGCGGGCGTAGAGGACTTCACCGGAGGCGAGCACCGGTAGGTAGGCTT
 
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rJMSF008B17-          GGTCTCGCCGTTGCACGTCATACTCCCAACCGGTTTACAGTCGCCGGGAGTTGGAGGCGA
JMSF008B17+                                    CCAACCGGTTTACAGTCGCCGGGAGTTGGAGGCGA
                      ____________________________________________________________
consensus             GGTCTCGCCGTTGCACGTCATACTCCCAACCGGTTTACAGTCGCCGGGAGTTGGAGGCGA
 
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rJMSF008B17-          GGGAGTAGAGCCGCCCCCTCGGCAGATATGCGTTCCGACGTCGGGGTCGTCGTTGCACTT
JMSF008B17+           GGGAGTAGAGCCGCCCCCTCGGCAGATATGCGTTCCGACGTCGGGGTCGTCGTTGCACTT
                      ____________________________________________________________
consensus             GGGAGTAGAGCCGCCCCCTCGGCAGATATGCGTTCCGACGTCGGGGTCGTCGTTGCACTT
 
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rJMSF008B17-          CCCGTTGATGCAAATTAGCTGCCCGGAACAATCGTTCAGGGTTTTGCAGGGGCCATTGCA
JMSF008B17+           CCCGTTGATGCAAATTAGCTGCCCGGAACAATCGTTCAGGGTTTTGCAGGGGCCATTGCA
                      ____________________________________________________________
consensus             CCCGTTGATGCAAATTAGCTGCCCGGAACAATCGTTCAGGGTTTTGCAGGGGCCATTGCA
 
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rJMSF008B17-          GGATGAAAGTGCATTTCCTTGAAGTGAAAAACAGACGAAAATTGTGAAAATGCAGAGAGA
JMSF008B17+           GGATGAAAGTGCATTTCCTTGAAGTGAAAAACAGACGAAAATTGTGAAAATGCAGAGAGA
                      ____________________________________________________________
consensus             GGATGAAAGTGCATTTCCTTGAAGTGAAAAACAGACGAAAATTGTGAAAATGCAGAGAGA
 
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rJMSF008B17-          AATAAGAGCAAGATTTGCCATGGCTACGTTACGTTGCTACTTCAATTCCTATAT      
JMSF008B17+           AATAAGAGCAAGATTTGCCATGGCTACGTTACGTTGCTACTTCAATTCCTATATTTGACC
                      ____________________________________________________________
consensus             AATAAGAGCAAGATTTGCCATGGCTACGTTACGTTGCTACTTCAATTCCTATATTTGACC