Contig 009195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005M09Sequence333009195 (7)ref|XP_009783164.1|6e-21PREDICTED: transcription factor bHLH121-like [Nicotiana sylvestris]322009903 (5)
JMSF026I20Sequence661009195 (7)ref|XP_009788103.1|1e-82PREDICTED: transcription factor bHLH121 [Nicotiana sylvestris]795009195 (7)ref|XP_009788103.1|3e-54PREDICTED: transcription factor bHLH121 [Nicotiana sylvestris]
JMSF033O19Sequence655009195 (7)ref|XP_006359649.1|7e-76PREDICTED: transcription factor bHLH121-like isoform X1 [Solanum tuberosum]735009195 (7)ref|XP_009788103.1|8e-39PREDICTED: transcription factor bHLH121 [Nicotiana sylvestris]
JMSF051H05Sequence735009195 (7)ref|XP_006359649.1|3e-78PREDICTED: transcription factor bHLH121-like isoform X1 [Solanum tuberosum]743009195 (7)ref|XP_009788103.1|1e-42PREDICTED: transcription factor bHLH121 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF033O19-                                                    GAAGTTAGACCATTATAA
rJMSF051H05-                                                              CATTATAA
                      ____________________________________________________________
consensus                                                       GAAGTTAGACCATTATAA
 
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rJMSF033O19-          GGTATGTAGTAGTTGAAATACATGAAGACAAGAAAACTTTCCCCACACCCACTTCAGAGT
rJMSF051H05-          GGTATGTAGTAGTTGAAATACATGAAGACAAGAAAACTTTCCCCACACCCACTTCAGAGT
rJMSF026I20-                    AGTTGAAATACATGAAGACAAGAAAACTTTCCCCACACCCACTTCAGAGT
                      ____________________________________________________________
consensus             GGTATGTAGTAGTTGAAATACATGAAGACAAGAAAACTTTCCCCACACCCACTTCAGAGT
 
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rJMSF033O19-          ACAAGGAAAATACCTTACAAGAAATAGCAAATTAAGGGCTACTCGTTGTGGCAGGAATAC
rJMSF051H05-          ACAAGGAAAATACCTTACAAGAAATAGCAAATTAAGGGCTACTCGTTGTGGCAGGAATAC
rJMSF026I20-          ACAAGGAAAATACCTTACAAGAAATAGCAAATTAAGGGCTACTCGTTGTGGCAGGAATAC
                      ____________________________________________________________
consensus             ACAAGGAAAATACCTTACAAGAAATAGCAAATTAAGGGCTACTCGTTGTGGCAGGAATAC
 
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rJMSF033O19-          CCTCGCCTCACTAATCAAATGTATTGTGATACAGAATAGCTACTTGGGTAAAAAAGAAAA
rJMSF051H05-          CCTCGCCTCACTAATCAAATGTATTGTGATACAGAATAGCTAATTGGGTAAAAAAGAAAA
rJMSF026I20-          CCTCGCCTCACTAATCAAATGTATTGTGATACAGAATAGCTAATTGGGTAAAAAAGAAAA
                      ____________________________________________________________
consensus             CCTCGCCTCACTAATCAAATGTATTGTGATACAGAATAGCTAATTGGGTAAAAAAGAAAA
 
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rJMSF033O19-          CCAGGTAAGGTATAAACTGTAGAAAACCTGGCTCTTATTCTACTCCCTTCATTTCTCGTC
rJMSF051H05-          CCAGGTAAGGTATAAACTGTAGAAAACCTGGCTCTTATTCTACTCCCTTCATTTCTCGTC
rJMSF026I20-          CCAGGTAAGGTATAAACTGTAGAAAACCTGGCTCTTATTCTACTCCCTTCATTTCTCGTC
                      ____________________________________________________________
consensus             CCAGGTAAGGTATAAACTGTAGAAAACCTGGCTCTTATTCTACTCCCTTCATTTCTCGTC
 
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rJMSF033O19-          TTTCTTTGAGTCACCAACTACACTATTTGATGAAAACGCCTGTACACTATGAGACGATGA
rJMSF051H05-          TTTCTTTGAGTCACCAACTACACTATTTGATGAAAACGCCTGTACACTATGAGACGATGA
rJMSF026I20-          TTTCTTTGAGTCACCAACTACACTATTTGATGAAAACGCCTGTACACTATGAGACGATGA
                      ____________________________________________________________
consensus             TTTCTTTGAGTCACCAACTACACTATTTGATGAAAACGCCTGTACACTATGAGACGATGA
 
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rJMSF033O19-          GCACCTACTAGAAGAACTTCCATCTGTGAGGCTGTTGTTCTCCATTGTCCGTTTTTTAGC
rJMSF051H05-          GCACCTACTAGAAGAACTTCCATCTGTGAGGCTGTTGTTCTCCATTGTCCGTTTTTTAGC
rJMSF026I20-          GCACCTACTAGAAGAACTTCCATCTGTGAGGCTGTTGTTCTCCATTGTCCGTTTTTTAGC
                      ____________________________________________________________
consensus             GCACCTACTAGAAGAACTTCCATCTGTGAGGCTGTTGTTCTCCATTGTCCGTTTTTTAGC
 
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rJMSF033O19-          CCTCCTTTGTCCAGATGAGAGTTCCTGTTCCGAGGTAGATCCAGGTGTCTTGAGCTCTAG
rJMSF051H05-          CCTCCTTTGTCCAGATGAGAGTTCCTGTTCCGAGGTAGATCCAGGTGTCTTGAGCTCTAG
rJMSF026I20-          CCTCCTTTGTCCAGATGAGAGTTCCTGTTCCGAGGTAGATCCAGGTGTCTTGAGCTCTAG
                      ____________________________________________________________
consensus             CCTCCTTTGTCCAGATGAGAGTTCCTGTTCCGAGGTAGATCCAGGTGTCTTGAGCTCTAG
 
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rJMSF033O19-          ATCTGTTGCAACTTCATTTGAGCCCTCACTTCTTTCAATCCTGCTCTCTTCTTGATCTGA
rJMSF051H05-          ATCTGTTGCAACTTCATTTGAGCCCTCACTTCTTTCAATCCTGCTCTCTTCTTGATCTGA
rJMSF026I20-          ATCTGTTGCAACTTCATTTGAGCCCTCACTTCTTTCAATCCTGCTCTCTTCTTGATCTGA
                      ____________________________________________________________
consensus             ATCTGTTGCAACTTCATTTGAGCCCTCACTTCTTTCAATCCTGCTCTCTTCTTGATCTGA
 
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rJMSF033O19-          CTTGTGTCTAGAATCTTGTTTGCTTAAACCATGGGTCCTACTACTGGGTTGAACAGCTGG
rJMSF051H05-          CTTGTGTCTAGAATCTTGTTTGCTTAAACCATGGGTCCTACTACTGGGTTGAACAGCTGG
rJMSF026I20-          CTTGTGTCTAGAATCTTGTTTGCTTAAACCATGGGTCCTACTACTGGGTTGAACAGCTGG
JMSF051H05+                                                                     GG
                      ____________________________________________________________
consensus             CTTGTGTCTAGAATCTTGTTTGCTTAAACCATGGGTCCTACTACTGGGTTGAACAGCTGG
 
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rJMSF033O19-          AGAGACGTGTGTGGATGGCTGCTCAATGATTGTTGTTGGAGTCATATACGGAACAAAAGT
rJMSF051H05-          AGAGACGTATGTGGATGGCTGCTCAATGATTGTTGTTGGAGTCATATACGGAACAAAAGT
rJMSF026I20-          AGAGACGTGTGTGGATGGCTGCTCAATGATTGTTGTTGGAGTCATATACGGAACAAAAGT
JMSF026I20+                                                 GAGTCATATACGGAACAAAAGT
JMSF051H05+           AGAGACGTATGTGGATGGCTGCTCAATGATTGTTGTNGGAGTCATATACGGAACAAAAG-
                      ____________________________________________________________
consensus             AGAGACGTATGTGGATGGCTGCTCAATGATTGTTGTTGGAGTCATATACGGAACAAAAGT
 
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rJMSF033O19-          TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCC-AAAAATGGGTAAGCTTGCAT
rJMSF051H05-          TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
rJMSF026I20-          TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
JMSF033O19+                       GGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
JMSF026I20+           TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
JMSF051H05+           TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
                      ____________________________________________________________
consensus             TGAACAAGGATTGGGGATAACAGCTGGATTCTGATTCCCAAAAAATGGGTAAGCTTGCAT
 
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rJMSF033O19-          TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTAT  
rJMSF051H05-          TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
rJMSF026I20-          TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
JMSF033O19+           TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
JMSF026I20+           TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
JMSF051H05+           TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
                      ____________________________________________________________
consensus             TGATGGATGCATAGGAATTGGTCCAGTTGGAATTGGCACGGGCACTGGATATGGGTATGA
 
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rJMSF051H05-          AGGAGGATGCATGAC                                             
rJMSF026I20-          AGGAGGATGCATGACTAAAGGATGATCCATCCCAGCCCATGGATACATAGTCCTAAGTCT
JMSF033O19+           AGGAGGATGCATGACTAAAGGATGATCCATCCCAGCCCATGGATACATAGTCCTAAGTCT
JMSF026I20+           AGGAGGATGCATGACTAAAGGATGATCCATCCCAGCCCATGGATACATAGTCCTAAGTCT
JMSF051H05+           AGGAGGATGCATGACTAAAGGATGATCCATCCCAGCCCATGGATACATAGTCCTAAGTCT
                      ____________________________________________________________
consensus             AGGAGGATGCATGACTAAAGGATGATCCATCCCAGCCCATGGATACATAGTCCTAAGTCT
 
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rJMSF026I20-          TTGTTGGTATGGAGCATNCAGGCTT                                   
JMSF033O19+           TTGTTGGTATTGAGCATTCAGGCTTTCAATATCAGATTTAATAGAGGACTTCTCTTCTCT
JMSF026I20+           TTGTTGGTATTGAGCATTCAGGCTTTCAATATCAGATTTAATAGAGGACTTCTCTTCTCT
JMSF051H05+           TTGTTGGTATTGAGCATTCAGGCTTTCAATATCAGATTTAATAGAGGACTTCTCTTCTCT
                      ____________________________________________________________
consensus             TTGTTGGTATTGAGCATTCAGGCTTTCAATATCAGATTTAATAGAGGACTTCTCTTCTCT
 
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JMSF033O19+           AAGATCATTCTTTTCTTGAGTCAACTCACGGCATTCATCAGTAAGAGCTGCATACTCCGA
JMSF026I20+           AAGATCATTCTTTTCTTGAGTCAACTCACGGCATTCATCAGTAAGAGCTGCATACTCCGA
JMSF051H05+           AAGATCATTCTTTTCTTGAGTCAACTCACGGCATTCATCAGTAAGAGCTGCATACTCCGA
                      ____________________________________________________________
consensus             AAGATCATTCTTTTCTTGAGTCAACTCACGGCATTCATCAGTAAGAGCTGCATACTCCGA
 
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JMSF033O19+           CTTAAGCCTGCTAACTTGATCACTCAAATCCTTCACCATTTGAATGGTATCGGTGAGAAT
JMSF026I20+           CTTAAGCCTGCTAACTTGATCACTCAAATCCTTCACCATTTGAATGGTATCGGTGAGAAT
JMSF051H05+           CTTAAGCCTGCTAACTTGATCACTCAAATCCTTCACCATTTGAATGGTATCGGTGAGAAT
                      ____________________________________________________________
consensus             CTTAAGCCTGCTAACTTGATCACTCAAATCCTTCACCATTTGAATGGTATCGGTGAGAAT
 
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JMSF033O19+           AGAGGCTTTATCGTTTTTAGGCCTATCAGGATCAAGAGTGTTTCCCAATTCTGTGAACTG
JMSF026I20+           AGAGGCTTTATCGTTTTTAGGCCTATCAGGATCAAGAGTGTTTCCCAATTCTGTGAACTG
JMSF051H05+           AGAGGCTTTATCGTTTTTAGGCCTATCAGGATCAAGAGTGTTTCCCAATTCTGTGAACTG
JMSF005M09+                                      AGGATCAAGAGTGTTTCCCAATTCTGTGAACTG
                      ____________________________________________________________
consensus             AGAGGCTTTATCGTTTTTAGGCCTATCAGGATCAAGAGTGTTTCCCAATTCTGTGAACTG
 
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JMSF033O19+           CTCATTCAAACGATCCCTCCTCAATTTCTCCCGATCAGCCTTCTGCACTTTCCGTGCAGC
JMSF026I20+           CTCATTCAAACGATCCCTCCTCAATTTCTCCCGATCAGCCTTCTGCACTTTCCGTGCAGC
JMSF051H05+           CTCATTCAAACGATCCCTCCTCAATTTCTCCCGATCAGCCTTCTGCACTTTCCGTGCAGC
JMSF005M09+           CTCATTCAAACGATCCCTCCTCAATTTCTCCCGATCAGCCTTCTGCACTTTCCGTGCAGC
                      ____________________________________________________________
consensus             CTCATTCAAACGATCCCTCCTCAATTTCTCCCGATCAGCCTTCTGCACTTTCCGTGCAGC
 
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JMSF033O19+           AATAGAGTCTCTGAGTTCTGCTTCTGGGCGGTCCTTAGCACTGCAATCGGGAGGTAACCG
JMSF026I20+           AATAGAGTCTCTGAGTTCTGCTTCTGGGCGGTCCTTAGCACTGCAATCGGGAGGTAACCG
JMSF051H05+           AATAGAGTCTCTGAGTTCTGCTTCTGGGCGGTCCTTAGCACTGCAATCGGGAGGTAACCG
JMSF005M09+           AATAGAGTCTCTGAGTTCTGCTTCTGGGCGGTCCTTAGCACTGCAATCGGGAGGTAACCG
                      ____________________________________________________________
consensus             AATAGAGTCTCTGAGTTCTGCTTCTGGGCGGTCCTTAGCACTGCAATCGGGAGGTAACCG
 
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JMSF033O19+           ATGTAAGCTGATATCAGGAAGAGGGTGCTGGGTGAATTCCGGTAACGATGTGCTCGGGGC
JMSF026I20+           ATGTAAGCTGATATCAGGAAGAGGGTGCTGGGTGAATTCCGGTAACGATGTGCTCGGGGC
JMSF051H05+           ATGTAAGCTGATATCAGGAAGAGGGTGCTGGGTGAATTCCGGTAACGATGTGCTCGGGGC
JMSF005M09+           ATGTAAGCTGATATCAGGAAGAGGGTGCTGGGTGAATTCCGGTAACGATGTGCTCGGGGC
                      ____________________________________________________________
consensus             ATGTAAGCTGATATCAGGAAGAGGGTGCTGGGTGAATTCCGGTAACGATGTGCTCGGGGC
 
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JMSF033O19+           GTTAATCGACTGATAAAAAGCACCGGCGTCGTGGTTCGATCGATCCATGGCTGCGATGAT
JMSF026I20+           GTTAATCGACTGATAAAAAGCACCGGCGTCGTGGTTC                       
JMSF051H05+           GTTAATCGACTGATAAAAAGCACCGGCGTCGTGGTTCGATCGATCCATGGCTGCGATGAT
JMSF005M09+           GTTAATCGACTGATAAAAAGCACCGGCGTCGTGGTTCGATCGATCCATGGCTGCGATGAT
                      ____________________________________________________________
consensus             GTTAATCGACTGATAAAAAGCACCGGCGTCGTGGTTCGATCGATCCATGGCTGCGATGAT
 
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JMSF033O19+           TGGTGT                                                      
JMSF051H05+           TGGTGT                                                      
JMSF005M09+           TGGTGTGACCTGTGTGAGATTATTGATTCGCGACTAGTGGGCTATCGGGTTTATCCAATC
                      ____________________________________________________________
consensus             TGGTGTGACCTGTGTGAGATTATTGATTCGCGACTAGTGGGCTATCGGGTTTATCCAATC