Contig 009189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003F10Sequence642009189 (5)ref|XP_007225841.1|4e-92hypothetical protein PRUPE_ppa011659mg [Prunus persica] gb|EMJ27040.1| hypotheti
JMSF005E05Sequence481009189 (5)ref|XP_007225841.1|2e-96hypothetical protein PRUPE_ppa011659mg [Prunus persica] gb|EMJ27040.1| hypotheti563009189 (5)ref|XP_010534126.1|4e-89PREDICTED: 40S ribosomal protein S18 [Tarenaya hassleriana] ref|XP_010538910.1|
JMSF033P12Sequence687009189 (5)ref|XP_007225841.1|6e-92hypothetical protein PRUPE_ppa011659mg [Prunus persica] gb|EMJ27040.1| hypotheti717009189 (5)ref|XP_007225841.1|9e-92hypothetical protein PRUPE_ppa011659mg [Prunus persica] gb|EMJ27040.1| hypotheti

Alignment

This contig is upended


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JMSF033P12+                                                 AATCATTCAATAATGTAGCAAA
rJMSF033P12-                  ACACTCAAGAGGATCTATTAAGTTCGCAAGAATCATTCAATAATGTAGCAAA
                      ____________________________________________________________
consensus                     ACACTCAAGAGGATCTATTAAGTTCGCAAGAATCATTCAATAATGTAGCAAA
 
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JMSF033P12+           ACAGAAAGACAAGGCTCATAAGGTCTGCCTTCATTGAACCCCTAAAAAGCTCAGTCTCAA
rJMSF033P12-          ACAGAAAGACAAGGCTCATAAGGTCTGCCTTCATTGAACCCCTAAAAAGCTCAGTCTCAA
JMFN003F10+                         CTCATAAGGTCTGCCTTCATTGAACCCCTAAAAAGCTCAGTCTCAA
                      ____________________________________________________________
consensus             ACAGAAAGACAAGGCTCATAAGGTCTGCCTTCATTGAACCCCTAAAAAGCTCAGTCTCAA
 
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JMSF033P12+           GAAACATGTACTACATGCTAAAGACCACATCATTGTATATGAAAACAAAATTTAGAACAA
rJMSF033P12-          GAAACATGTACTACATGCTAAAGACCACATCATTGTATATGAAAACAAAATTTAGAACAA
JMFN003F10+           GAAACATGTACTACATGCTAAAGACCACATCATTGTATATGAAAACAAAATTTAGAACAA
                      ____________________________________________________________
consensus             GAAACATGTACTACATGCTAAAGACCACATCATTGTATATGAAAACAAAATTTAGAACAA
 
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JMSF033P12+           AACATGAAATCACAGGTGTAATCAATCTTAACGCTTCTTTGAGACACCAACAGTCTTTCC
rJMSF005E05-                                       AACGCTTCTTTGAGACACCAACAGTCTTTCC
rJMSF033P12-          AACATGAAATCACAGGTGTAATCAATCTTAACGCTTCTTTGAGACACCAACAGTCTTTCC
JMFN003F10+           AACATGAAATCACAGGTGTAATCAATCTTAACGCTTCTTTGAGACACCAACAGTCTTTCC
                      ____________________________________________________________
consensus             AACATGAAATCACAGGTGTAATCAATCTTAACGCTTCTTTGAGACACCAACAGTCTTTCC
 
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JMSF033P12+           CCTACGTCCAGTTGTCTTAGTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
rJMSF005E05-          CCTACGTCCAGTTGTCTTANTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
rJMSF033P12-          CCTACGTCCAGTTGTCTTAGTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
JMFN003F10+           CCTACGTCCAGTTGTCTTAGTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
JMSF005E05+             TACGTCCAGTTGTCTTAGTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
                      ____________________________________________________________
consensus             CCTACGTCCAGTTGTCTTAGTGTGCTGTCCACGTACACGAAGACCCCAGTAGTGACGAAG
 
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JMSF033P12+           ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
rJMSF005E05-          ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
rJMSF033P12-          ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
JMFN003F10+           ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
JMSF005E05+           ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
                      ____________________________________________________________
consensus             ACCACGGTGATTCCTAATTTTCTTCAATCGCTCAAGATCATCCCTGAGCTTCATGTCCAA
 
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JMSF033P12+           TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
rJMSF005E05-          TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
rJMSF033P12-          TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
JMFN003F10+           TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
JMSF005E05+           TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
                      ____________________________________________________________
consensus             TGCATTGGACACAACCTGAGAATAGCCGCCATCCTTGTAGTCCTTCTGCCTGTTAAGGAA
 
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JMSF033P12+           CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
rJMSF005E05-          CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
rJMSF033P12-          CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
JMFN003F10+           CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
JMSF005E05+           CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
                      ____________________________________________________________
consensus             CCAGTCAGGAACCTTGAACTGGCGAGGGTTCGCAACAACAGTCATCAAGTTGTCAATCTC
 
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JMSF033P12+           AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
rJMSF005E05-          AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
rJMSF033P12-          AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
JMFN003F10+           AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
JMSF005E05+           AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
                      ____________________________________________________________
consensus             AGCTGAAGAAAGTTCACCAGCCCTTTTGTTCATGTCAATATCAGCTTTTTTGCAGCAGAT
 
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JMSF033P12+           GTTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
rJMSF005E05-          GCTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
rJMSF033P12-          GTTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
JMFN003F10+           GTTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
JMSF005E05+           GCTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
                      ____________________________________________________________
consensus             GTTGGCGAATCGGCGGCCGATACCCTTGATGGAGGTGAGAGCGAACATAATCTTCTGCTT
 
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JMSF033P12+           CCCATCGACGTTGGTGTTCAGGATACGCAGAATGTGCTGGAAATCCTCGTTCGCTACCAA
rJMSF005E05-          CCCATCGACGTTGGTGTTCAGGA                                     
rJMSF033P12-          CCCATCGACGTTGGTGTTCAGGATACGCAGAATGTGCTGGAAATCCTCGTTCGCTACCAA
JMFN003F10+           CCCATCGACGTTGGTGTTCAGGATACGCAGAATGTGCTGGAAATCCTCGTTCGCTACCAA
JMSF005E05+           CCCATCGACGTTGGTGTTCAGGATACGCAGAATGTGCTGGAAATCCTCGTTCGCTACCAA
                      ____________________________________________________________
consensus             CCCATCGACGTTGGTGTTCAGGATACGCAGAATGTGCTGGAAATCCTCGTTCGCTACCAA
 
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JMSF033P12+           ACTCATG                                                     
rJMSF033P12-          ACTCATG                                                     
JMFN003F10+           ACTCATGGCTGCGGCTTGTTTTTTCCCTCTCCGACTCTCACTCTTCTGCAGGGCC     
JMSF005E05+           ACTCATGGCTGCGGCTTGTTTTTTCCCTCTCCGACTCTCACTCTTCTGCAGGGCCCCGGC
                      ____________________________________________________________
consensus             ACTCATGGCTGCGGCTTGTTTTTTCCCTCTCCGACTCTCACTCTTCTGCAGGGCCCCGGC