Contig 009185:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005B06Sequence258009185 (2)
JMSF042B22Sequence753009185 (2)ref|XP_009628505.1|3e-76PREDICTED: APO protein 1, chloroplastic [Nicotiana tomentosiformis] ref|XP_00962728019413ref|XP_003548251.1|4e-50PREDICTED: APO protein 1, chloroplastic-like [Glycine max] gb|KHN24430.1| APO pr

Alignment

This contig is upended


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JMSF042B22+                                      CAACACCAGNCCTGGATGCAAAGTTNTACAATA
                      ____________________________________________________________
consensus                                        CAACACCAGNCCTGGATGCAAAGTTNTACAATA
 
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JMSF042B22+           GCCGGAATTCTATCAAAATCAAACCGAGTCTCATGCTTAATGCGCTTACCAAAAGGATCA
                      ____________________________________________________________
consensus             GCCGGAATTCTATCAAAATCAAACCGAGTCTCATGCTTAATGCGCTTACCAAAAGGATCA
 
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JMSF042B22+           TACATATGGTACGACTCAATAGGGATAAGTATGTCATTGATAGAACCTTTCACCCACGAG
                      ____________________________________________________________
consensus             TACATATGGTACGACTCAATAGGGATAAGTATGTCATTGATAGAACCTTTCACCCACGAG
 
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JMSF042B22+           TGGCAGCCCTTGCGACTGGGACCACTCGTCCCACGACAATCTTGAATCTCATGAGCCCTC
                      ____________________________________________________________
consensus             TGGCAGCCCTTGCGACTGGGACCACTCGTCCCACGACAATCTTGAATCTCATGAGCCCTC
 
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JMSF042B22+           TCAGCAATATGAACTTCTGAGCATTCACAACAAGCATAAACCGGAACTACATGGAGGAGC
                      ____________________________________________________________
consensus             TCAGCAATATGAACTTCTGAGCATTCACAACAAGCATAAACCGGAACTACATGGAGGAGC
 
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JMSF042B22+           TGGGCCACTCCATTAATCAAAATCTTCCAAGCATCTAATACTTGATAAGCAACCGGAAGT
                      ____________________________________________________________
consensus             TGGGCCACTCCATTAATCAAAATCTTCCAAGCATCTAATACTTGATAAGCAACCGGAAGT
 
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JMSF042B22+           AATTCAGGCACCAAAACCCCATTCTTTGGAGGCTGAAGAGGCTTCTCCACTCCCTTCTGT
                      ____________________________________________________________
consensus             AATTCAGGCACCAAAACCCCATTCTTTGGAGGCTGAAGAGGCTTCTCCACTCCCTTCTGT
 
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JMSF042B22+           GCGAGCTTTTTATCAGCCCTTGCAGCCTGCAAAATTTTCTTGAGAGGTATGGGATATGGC
                      ____________________________________________________________
consensus             GCGAGCTTTTTATCAGCCCTTGCAGCCTGCAAAATTTTCTTGAGAGGTATGGGATATGGC
 
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JMSF042B22+           TTCTTCTTGTTCTTGGGCTGAACCGGGGGAAAATCCACGTTTTGAGGAACTCCATTTTTC
JMSF005B06+                                                     TGAGGAACTCCATTTTTC
                      ____________________________________________________________
consensus             TTCTTCTTGTTCTTGGGCTGAACCGGGGGAAAATCCACGTTTTGAGGAACTCCATTTTTC
 
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JMSF042B22+           TTAGTCTTACCATCTCGGGGACTGGGAGGTGTCCTATCAAGACTAAGGAAAACCCCAGCT
JMSF005B06+           TTAGTCTTACCATCTCGGGGACTGGGAGGTGTCCTATCAAGACTAAGGAAAACCCCAGCT
                      ____________________________________________________________
consensus             TTAGTCTTACCATCTCGGGGACTGGGAGGTGTCCTATCAAGACTAAGGAAAACCCCAGCT
 
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JMSF042B22+           CTTCTTGCAGCATAATACTGAGGCTTCAGATATTCGAATTTGTCAGAGCAAGAACCGCGG
JMSF005B06+           CTTCTTGCAGCATAATACTGAGGCTTCAGATATTCGAATTTGTCAGAGCAAGAACCGCGG
                      ____________________________________________________________
consensus             CTTCTTGCAGCATAATACTGAGGCTTCAGATATTCGAATTTGTCAGAGCAAGAACCGCGG
 
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JMSF042B22+           AGAGTTTGGGTCCAGGGAGCGAAAGTCAGAGCTGGAAACCGATGGAGCATTTGCCGCTAT
JMSF005B06+           AGAGTTTGGGTCCAGGGAGCGAAAGTCAGAGCTGGAAACCGATGGAGCATTTGCCGCTAT
                      ____________________________________________________________
consensus             AGAGTTTGGGTCCAGGGAGCGAAAGTCAGAGCTGGAAACCGATGGAGCATTTGCCGCTAT
 
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JMSF042B22+           TGTGCGCGTCCTCGATGAATTTTTCGGTGCTTCCGCGGCGATGAAGGAGTGAATTGCTCC
JMSF005B06+           TGTGCGCGTCCTCGATGAATTTTTCGGTGCTTCCGCGGCGATGAAGGAGTGAATTGCTCC
                      ____________________________________________________________
consensus             TGTGCGCGTCCTCGATGAATTTTTCGGTGCTTCCGCGGCGATGAAGGAGTGAATTGCTCC