Contig 009182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004H17Sequence401009182 (4)ref|XP_004229046.1|4e-32PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Solanum lycope
JMSF031K02Sequence707009182 (4)ref|XP_006337961.1|2e-71PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like [Solanum t739009182 (4)ref|XP_006337961.1|2e-71PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like [Solanum t
JMSF039M09Sequence699009182 (4)ref|XP_006337961.1|5e-81PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like [Solanum t901022612ref|XP_006337961.1|2e-82PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic-like [Solanum t

Alignment

This contig is upended


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rJMSF031K02-                                                       ATACAATGGATAATC
                      ____________________________________________________________
consensus                                                          ATACAATGGATAATC
 
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rJMSF031K02-          ACAGAACAAAAATAGTGAAAACTGACAAAGTGATAGATATAGAGGATTAGAAATAAGGAG
                      ____________________________________________________________
consensus             ACAGAACAAAAATAGTGAAAACTGACAAAGTGATAGATATAGAGGATTAGAAATAAGGAG
 
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rJMSF031K02-          AATATCTAAATTAGCAAAACACGATAGTTATAAAGAGCATACAAGCTTGCCTTGTGGTGA
JMSF039M09+                                                             CTTGTGGTGA
JMSF031K02+                                                             CTTGTGGTGA
                      ____________________________________________________________
consensus             AATATCTAAATTAGCAAAACACGATAGTTATAAAGAGCATACAAGCTTGCCTTGTGGTGA
 
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rJMSF031K02-          AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
JMSF039M09+           AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
JMSF031K02+           AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
                      ____________________________________________________________
consensus             AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
 
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rJMSF031K02-          ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
JMSF039M09+           ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
JMSF031K02+           ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
                      ____________________________________________________________
consensus             ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
 
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rJMSF031K02-          GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
JMSF039M09+           GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
JMSF031K02+           GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
                      ____________________________________________________________
consensus             GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
 
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rJMSF031K02-          TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
JMSF039M09+           TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
JMSF031K02+           TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
                      ____________________________________________________________
consensus             TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
 
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rJMSF031K02-          TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF039M09+           TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF031K02+           TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF004H17+                              AAAGCGCCCGCTGAAGCANGAAGCCGCGNCCGGCGACCAAT
                      ____________________________________________________________
consensus             TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
 
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rJMSF031K02-          GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF039M09+           GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF031K02+           GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF004H17+           GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
                      ____________________________________________________________
consensus             GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
 
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rJMSF031K02-          AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF039M09+           AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF031K02+           AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF004H17+           AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
                      ____________________________________________________________
consensus             AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
 
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rJMSF031K02-          CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF039M09+           CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF031K02+           CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF004H17+           CCGTCGAGGGTCACCGGNGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
                      ____________________________________________________________
consensus             CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
 
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rJMSF031K02-          CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF039M09+           CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF031K02+           CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF004H17+           CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATANTAATCTCTCTGG
                      ____________________________________________________________
consensus             CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
 
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rJMSF031K02-          AAGTGACAGAGA                                                
JMSF039M09+           AAGTGACAGAGAATTAATTCGAATTTAGGAGCTGCATTTCATTCTTCCAAAATTGTGAGA
JMSF031K02+           AAGTGACAGAGAATTAATTCGAATTTAGGAG--GCATTTCATTCTTCCAAAATTGTGAGA
JMSF004H17+           AAGTGACAGAGAATTAATTCGAATTTAGGAGCTGCATTTCATTCTTCCAAAATTGTGAGA
                      ____________________________________________________________
consensus             AAGTGACAGAGAATTAATTCGAATTTAGGAGCTGCATTTCATTCTTCCAAAATTGTGAGA
 
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JMSF039M09+           AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTC                      
JMSF031K02+           AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGC    
JMSF004H17+           AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGCAACC
                      ____________________________________________________________
consensus             AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGCAACC