Contig 009180:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B12Sequence329009180 (4)
JMFN044N09Sequence563009180 (4)ref|XP_006347235.1|9e-29PREDICTED: 60S acidic ribosomal protein P2 [Solanum tuberosum]
JMSF004E15Sequence257009180 (4)ref|XP_009589318.1|5e-28PREDICTED: 60S acidic ribosomal protein P2A-like [Nicotiana tomentosiformis]359009180 (4)ref|XP_009800754.1|6e-09PREDICTED: 60S acidic ribosomal protein P2-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN044N09+                                       AGAAAGGGAAATCAAATGCAATAACTGAAACT
                      ____________________________________________________________
consensus                                         AGAAAGGGAAATCAAATGCAATAACTGAAACT
 
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JMFN044N09+           AGAATTACTGTTTGTATCATCTTCCAATTGTTTTCTAAGAGTTGATTCAACAAAAGTAAC
                      ____________________________________________________________
consensus             AGAATTACTGTTTGTATCATCTTCCAATTGTTTTCTAAGAGTTGATTCAACAAAAGTAAC
 
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JMFN044N09+           ACAAAACTGCCTACAGTGGACATGGGCAATGGAAGAACCCTTACACAGAAAGGCCAATGG
                      ____________________________________________________________
consensus             ACAAAACTGCCTACAGTGGACATGGGCAATGGAAGAACCCTTACACAGAAAGGCCAATGG
 
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rJMSF004E15-                   CTTCTAATCAAAGAGACTGAATCCCATATCGTCATCCGACTCCTCTTTCTC
rJMCP002B12+                   CTTCTAATCAAAGAGACTGAATCCCATATCGTCATCCGACTCCTCTTTCTC
JMFN044N09+           GGGGGGAGTCTTCTAATCAAAGAGACTGAATCCCATATCGTCATCCGACTCCTCTTTCTC
                      ____________________________________________________________
consensus             GGGGGGAGTCTTCTAATCAAAGAGACTGAATCCCATATCGTCATCCGACTCCTCTTTCTC
 
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rJMSF004E15-          TTCTACCTTCTTTTCCTCCTTTTTCTCCTCAGCAGCTGGAGCAGCCGAGGCAGCACCACC
rJMCP002B12+          TTCTACCTTCTTTTCCTCCTTTTTCTCCTCAGCAcgTGGtGgtcg               
JMFN044N09+           TTCTACCTTCTTTTCCTCCTTTTTCTCCTCAGCAGCTGGAGCAGCCGAGGCAGCACCACC
                      ____________________________________________________________
consensus             TTCTACCTTCTTTTCCTCCTTTTTCTCCTCAGCAGCTGGAGCAGCCGAGGCAGCACCACC
 
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rJMSF004E15-          AGCAGGTGCCGCAACAGCCACAGCAGCACCACCACTCGGCACTGAAGCCAACTTTTCCCT
JMFN044N09+           AGCAGGTGCCGCAACAGCCACAGCAGCACCACCACTCGGCACTGAAGCCAACTTTTCCCT
JMSF004E15+                                                      GAAGCCAACTTTTCCNT
                      ____________________________________________________________
consensus             AGCAGGTGCCGCAACAGCCACAGCAGCACCACCACTCGGCACTGAAGCCAACTTTTCCCT
 
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rJMSF004E15-          CCCGGCTGCAATCAACTCTGTAATGTCTTTCCCTTCAACTTGAGACAAGAGGAGTTCAAC
JMFN044N09+           CCCGGCTGCAATCAACTCTGTAATGTCTTTCCCTTCAACTTGAGACAAGAGGAGTTCAAT
JMSF004E15+           CCCGGCTGCAATCAACTCTGTAATGTCTTTCCCTTCAACTTGAGACAAGAGGAGTTCAAC
                      ____________________________________________________________
consensus             CCCGGCTGCAATCAACTCTGTAATGTCTTTCCCTTCAACTTGAGACAAGAGGAGTTCAAC
 
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rJMSF004E15-          TCTATCATCATCAGCCT                                           
JMFN044N09+           TCTATCATCATCAGCCTCAGCTCCAACAGAAGATAGGATCTTCTTGATATCACCGGCGGA
JMSF004E15+           TCTATCATCATCAGCCTCAGCTCCAACAGAAGATAGGATCTTCTTGATATCACCGGCGGA
                      ____________________________________________________________
consensus             TCTATCATCATCAGCCTCAGCTCCAACAGAAGATAGGATCTTCTTGATATCACCGGCGGA
 
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JMFN044N09+           AGGACAGGCGTTGCCACCCAACACGGCCAACAAGTA                        
JMSF004E15+           AGGACAGGCGTTGCCACCCAACACGGCCAACAAGTAAGCGGCGACGACCTTCATTTTTTT
                      ____________________________________________________________
consensus             AGGACAGGCGTTGCCACCCAACACGGCCAACAAGTAAGCGGCGACGACCTTCATTTTTTT
 
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JMSF004E15+           TCCCTTCAGAAAGTGAGACCGTGAGACTGTGAGAGGCTGCTCCCTGCTAGTGTTTAGCTC
                      ____________________________________________________________
consensus             TCCCTTCAGAAAGTGAGACCGTGAGACTGTGAGAGGCTGCTCCCTGCTAGTGTTTAGCTC