Contig 009178:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003K13Sequence406009178 (2)ref|XP_006367266.1|6e-13PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic719014107 (3)ref|XP_009776250.1|1e-60PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic
JMSF032A01Sequence700009178 (2)ref|XP_009602546.1|2e-54PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic731014107 (3)ref|XP_009776250.1|1e-57PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic

Alignment

This contig is upended


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JMSF032A01+                            AAAAATATGTGCATACCTGATGGCAGCACTTGGGTTTACTTTT
                      ____________________________________________________________
consensus                              AAAAATATGTGCATACCTGATGGCAGCACTTGGGTTTACTTTT
 
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JMSF032A01+           CTGACACAAAGCCTTATGATTTCCAAGGGCTCCACAAATTCTTTAATTGGCAAACCATAC
                      ____________________________________________________________
consensus             CTGACACAAAGCCTTATGATTTCCAAGGGCTCCACAAATTCTTTAATTGGCAAACCATAC
 
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JMSF032A01+           CCTTGTAGTGTTTCCATGAAGGTAACAATTTCTTCCTCTTTGCCACATTTCACAATGCGC
                      ____________________________________________________________
consensus             CCTTGTAGTGTTTCCATGAAGGTAACAATTTCTTCCTCTTTGCCACATTTCACAATGCGC
 
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JMSF032A01+           TGACAATCCTTGTGAAGCGCGTCAATAGCAGCTCCATCAAGCAGCAGAGGAGGATGAATT
                      ____________________________________________________________
consensus             TGACAATCCTTGTGAAGCGCGTCAATAGCAGCTCCATCAAGCAGCAGAGGAGGATGAATT
 
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JMSF032A01+           TGCAGCTTCTGAACACTGCTCAGCAGCTCGACAACTCTCCCTCTCTTCCCTTCCTCGATC
                      ____________________________________________________________
consensus             TGCAGCTTCTGAACACTGCTCAGCAGCTCGACAACTCTCCCTCTCTTCCCTTCCTCGATC
 
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JMSF032A01+           ATCCTCACGATTCCAAGAGAAATGAGGTTCACATTCAGCAACCTTGCAAAATTCGCGGCA
JMSF003K13+                         AAGAGAAATGAGGTTCACATTCAGCAACCTTGCAAAATTCGCGGCA
                      ____________________________________________________________
consensus             ATCCTCACGATTCCAAGAGAAATGAGGTTCACATTCAGCAACCTTGCAAAATTCGCGGCA
 
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JMSF032A01+           TCGGTTCCGGAAACGACGACGCTTTCCACAATCATCATGAAATCCTGGAATCTCCCGTCC
JMSF003K13+           TCGGTTCCGGAAACGACGACGCTTTCCACAATCATCATGAAATCCTGGAATCTCCCGTCC
                      ____________________________________________________________
consensus             TCGGTTCCGGAAACGACGACGCTTTCCACAATCATCATGAAATCCTGGAATCTCCCGTCC
 
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JMSF032A01+           TCGGCGTGGCGGGAAGCGATTTCTGCGTAGAACTTGAGGCCCCTGCGGTGGTAGGAGGCG
JMSF003K13+           TCGGCGTGGCGGGAAGCGATTTCTGCGTAGAACTTGAGGCCCCTGCGGTGGTAGGAGGCG
                      ____________________________________________________________
consensus             TCGGCGTGGCGGGAAGCGATTTCTGCGTAGAACTTGAGGCCCCTGCGGTGGTAGGAGGCG
 
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JMSF032A01+           GTGGAGTCCCATTTCGGAGTGGGCGTGAGCAGAGGAGGTGGAGAAGAAGTGGAGAAGGTG
JMSF003K13+           GTGGAGTCCCATTTCGGAGTGGGCGTGAGCAGAGGAGGTGGAGAAGAAGTGGAGAAGGTG
                      ____________________________________________________________
consensus             GTGGAGTCCCATTTCGGAGTGGGCGTGAGCAGAGGAGGTGGAGAAGAAGTGGAGAAGGTG
 
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JMSF032A01+           GAGGCTGAGTTGTAGGGACTGGACTTCTTCTTGGGCTTTAGTTTAGGCTTGGACTTTGTG
JMSF003K13+           GAGGCTGAGTTGTAGGGACTGGACTTCTTCTTGGGCTTTAGTTTAGGCTTGGACTTTGTG
                      ____________________________________________________________
consensus             GAGGCTGAGTTGTAGGGACTGGACTTCTTCTTGGGCTTTAGTTTAGGCTTGGACTTTGTG
 
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JMSF032A01+           GTGGACGGGCGGTGGTTGCGGTGGCGGTGCGGCGGAGTAGGCGCGGGGTTGGGCGGAGGG
JMSF003K13+           GTGGACGGGCGGTGGTTGCGGTGGCGGTGCGGCGGAGTAGGCGCGGGGTTGGGCGGAGGG
                      ____________________________________________________________
consensus             GTGGACGGGCGGTGGTTGCGGTGGCGGTGCGGCGGAGTAGGCGCGGGGTTGGGCGGAGGG
 
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JMSF032A01+           AGAGAAACGGAAGAGGAGGGAAGGATGACTAGCGCTTCTCTCATTCCTGGCCAACC    
JMSF003K13+           AGAGAAACGGAAGAGGAGGGAAGGATGACTAGCGCTTCTCTCATTCCTGGCCAACCGTTC
                      ____________________________________________________________
consensus             AGAGAAACGGAAGAGGAGGGAAGGATGACTAGCGCTTCTCTCATTCCTGGCCAACCGTTC