Contig 009171:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003C02Sequence384009171 (2)emb|CDP09384.1|8e-13unnamed protein product [Coffea canephora]741007017 (2)ref|XP_006349441.1|5e-88PREDICTED: putative dihydroxy-acid dehydratase, mitochondrial-like [Solanum tub
JMSF046E04Sequence778009171 (2)emb|CDP09384.1|3e-109unnamed protein product [Coffea canephora]631023633ref|XP_009596653.1|7e-108PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial [Nicotiana tomento

Alignment

This contig is upended


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JMSF046E04+                                    TCCATAAACCTGGAAGGCAGAGACTATGTCAAATG
                      ____________________________________________________________
consensus                                      TCCATAAACCTGGAAGGCAGAGACTATGTCAAATG
 
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JMSF046E04+           TGTGTCCTTGAAAATGACCGGGCTTGATAGTTCCACCATAAACCATGATGCTTGGCCTGT
                      ____________________________________________________________
consensus             TGTGTCCTTGAAAATGACCGGGCTTGATAGTTCCACCATAAACCATGATGCTTGGCCTGT
 
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JMSF046E04+           TCAGCCGCCCCATTGCCATAATTGTACCTGGCATATTTTTGTCACAGCCGGGGATAGATA
                      ____________________________________________________________
consensus             TCAGCCGCCCCATTGCCATAATTGTACCTGGCATATTTTTGTCACAGCCGGGGATAGATA
 
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JMSF046E04+           TGTTCCCATCGTACCACTGAGCAGACATGACAGTCTCAATACTATCAGCAATCAAGTCCC
                      ____________________________________________________________
consensus             TGTTCCCATCGTACCACTGAGCAGACATGACAGTCTCAATACTATCAGCAATCAAGTCCC
 
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JMSF046E04+           TTGACTGAAGGCTATAGCACATCCCTCTGGTCCCCATAGAAATGGCATCACTGACCCCAA
                      ____________________________________________________________
consensus             TTGACTGAAGGCTATAGCACATCCCTCTGGTCCCCATAGAAATGGCATCACTGACCCCAA
 
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JMSF046E04+           TAGTATTGAACCTGAACCCAACCATGCCGGCCGCTCCGACGCCCTCCTTCACGGCCTCGG
                      ____________________________________________________________
consensus             TAGTATTGAACCTGAACCCAACCATGCCGGCCGCTCCGACGCCCTCCTTCACGGCCTCGG
 
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JMSF046E04+           CGAGCTTGAGCAAGTGCATATTGCAGGTGTTCCCTTCGTACCAGACGGATGAAATGCCGA
                      ____________________________________________________________
consensus             CGAGCTTGAGCAAGTGCATATTGCAGGTGTTCCCTTCGTACCAGACGGATGAAATGCCGA
 
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JMSF046E04+           CCTGGGGCTTGTGCATATCATCATCCGAGAGGCCCACCCCATAGAGTACGGCCTGCGAGG
JMSF003C02+                                               CCCCATAGAGTACGGCCTGCGAGG
                      ____________________________________________________________
consensus             CCTGGGGCTTGTGCATATCATCATCCGAGAGGCCCACCCCATAGAGTACGGCCTGCGAGG
 
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JMSF046E04+           CGCCCTGGGACTTGGGCTCCGTGATGCGCGAGCTGTACTTGTTGAGCTTCTCGGCGGCAG
JMSF003C02+           CGCCCTGGGACTTGGGCTCCGTGATGCGCGAGCTGTACTTGTTGAGCTTCTCGGCGGCAG
                      ____________________________________________________________
consensus             CGCCCTGGGACTTGGGCTCCGTGATGCGCGAGCTGTACTTGTTGAGCTTCTCGGCGGCAG
 
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JMSF046E04+           AAGCGGTCTGGGGCGGCGGCGGGACTTTTTCCGGCGCGGAGACGGCCTGGATGGTGAAAG
JMSF003C02+           AAGCGGTCTGGGGCGGCGGCGGGACTTTTTCCGGCGCGGAGACGGCCTGGATGGTGAAAG
                      ____________________________________________________________
consensus             AAGCGGTCTGGGGCGGCGGCGGGACTTTTTCCGGCGCGGAGACGGCCTGGATGGTGAAAG
 
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JMSF046E04+           TGGGCGGCTTTCTTTGCCGGGGCCTACATGGAGAGAAACGGGTCTTAAAGATTGGTGCAG
JMSF003C02+           TGGGCGGCTTTCTTTGCCGGGGCCTACATGGAGAGAAACGGGTCTTAAAGATTGGTGCAG
                      ____________________________________________________________
consensus             TGGGCGGCTTTCTTTGCCGGGGCCTACATGGAGAGAAACGGGTCTTAAAGATTGGTGCAG
 
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JMSF046E04+           AAGAGTTGTGGGTAGGCGCAGGTGTGAGGGTACCCGTGGATAGTAAGTTGGCTTGCATTG
JMSF003C02+           AAGAGTTGTGGGTAGGCGCAGGTGTGAGGGTACCCGTGGATAGTAAGTTGGCTTGCATTG
                      ____________________________________________________________
consensus             AAGAGTTGTGGGTAGGCGCAGGTGTGAGGGTACCCGTGGATAGTAAGTTGGCTTGCATTG
 
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JMSF046E04+           CGGCGGCGGCGGCGGCCGGTGACGCTAAGCCCTCCGGGAAGACAGTGGGAGAGAAAGGAA
JMSF003C02+           CGGCGGCGGCGGCGGCCGGTGACGCTAAGCCCTCCGGGAAGACAGTGGGAGAGAAAGGAA
                      ____________________________________________________________
consensus             CGGCGGCGGCGGCGGCCGGTGACGCTAAGCCCTCCGGGAAGACAGTGGGAGAGAAAGGAA
 
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JMSF046E04+           TGCTTCAGTAAGTGGCGTTGGC                                      
JMSF003C02+           TGCTTCAGTAAGTGGCGTTGGCACACGACTCTTTGGGTTTACAAATTTTAAGGGTTTCCC
                      ____________________________________________________________
consensus             TGCTTCAGTAAGTGGCGTTGGCACACGACTCTTTGGGTTTACAAATTTTAAGGGTTTCCC