Contig 009160:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024J24Sequence471009160 (4)781002595 (3)ref|XP_009621515.1|238PREDICTED: uncharacterized protein LOC104113120 [Nicotiana tomentosiformis]
JMFF035C24Sequence512009160 (4)776002595 (3)ref|XP_009621515.1|238PREDICTED: uncharacterized protein LOC104113120 [Nicotiana tomentosiformis]
JMFS005F11Sequence567009160 (4)
JMSF001O20Sequence204009160 (4)733002595 (3)ref|XP_006378677.1|4e-60hypothetical protein POPTR_0010s19970g [Populus trichocarpa] gb|ERP56474.1| hypo

Alignment

This contig is upended


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JMFS005F11+                                       ATATCATCCTTATCAACTACAACAAGAAGGCT
                      ____________________________________________________________
consensus                                         ATATCATCCTTATCAACTACAACAAGAAGGCT
 
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JMFS005F11+           AAAAACTAATTATGCAGATTTTGAAGAAAAAATTGATCAAACTAAGTTTTTGAAAATAAA
                      ____________________________________________________________
consensus             AAAAACTAATTATGCAGATTTTGAAGAAAAAATTGATCAAACTAAGTTTTTGAAAATAAA
 
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JMFS005F11+           AGAAAAAATATACCTTTGATAGCTATGTCTTGACGAAATATTTCAAAATATTTCCCAGAT
                      ____________________________________________________________
consensus             AGAAAAAATATACCTTTGATAGCTATGTCTTGACGAAATATTTCAAAATATTTCCCAGAT
 
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JMFS005F11+           TGTGTAAAATTTTTGAAACATTTATCATTATTTTTTCGAACATGTATAGATTTCGAAAAA
                      ____________________________________________________________
consensus             TGTGTAAAATTTTTGAAACATTTATCATTATTTTTTCGAACATGTATAGATTTCGAAAAA
 
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JMFS005F11+           ACAAAAAAAAAACAAAAGGCGCAAAATTTCCGATCTGTTTTTCGGAAATAATACAAAACG
                      ____________________________________________________________
consensus             ACAAAAAAAAAACAAAAGGCGCAAAATTTCCGATCTGTTTTTCGGAAATAATACAAAACG
 
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JMFF035C24+           AAACCTGTACGCTTTTTGCGAGCGGCGCTCCGGAAGAGCGATGGCGGCGCGTCTCGGGTG
JMFF024J24+           AAACCTGTACGCTTTTTGCGAGCGGCGCTCCGGAAGAGCGATGGCGGCGCGTCTCGGGTG
JMFS005F11+           AAACCTGTACGCTTTTTGCGAGCGGCGCTCCGGAAGAGCGATGGCGGCGCGTCTCGGGTG
                      ____________________________________________________________
consensus             AAACCTGTACGCTTTTTGCGAGCGGCGCTCCGGAAGAGCGATGGCGGCGCGTCTCGGGTG
 
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JMFF035C24+           ATGCGGTGGGTTTCTTGGCTGATCGACCTCCTTTTTTTCCGATCTGCACCATCGATCGGT
JMFF024J24+           ATGCGGTGGGTTTCTTGGCTGATCGACCTCCTTTTTTTCCGATCTGCACCATCGATCGGT
JMFS005F11+           ATGCGGTGGGTTTCTTGGCTGATCGACCTCCTTTTTTTCCGATCTGCACCATCGATCGGT
JMSF001O20+                                               TTCCGATCTGCACCATCGATCGGT
                      ____________________________________________________________
consensus             ATGCGGTGGGTTTCTTGGCTGATCGACCTCCTTTTTTTCCGATCTGCACCATCGATCGGT
 
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JMFF035C24+           GGTGCTGGGGTAACGATCGGCGGTGGTTTGATGCTTTGCGGCGATGGCGACGCAGGAGAC
JMFF024J24+           GGTGCTGGGGTAACGATCGGCGGTGGTTTGATGCTTTGCGGCGATGGCGACGCAGGAGAC
JMFS005F11+           GGTGCTGGGGTAACGATCGGCGGTGGTTTGATGCTTTGCGGCGATGGCGACGCAGGAGAC
JMSF001O20+           GGTGCTGGGGTAACGATCGGCGGTGGTTTGATGCTTTGCGGCGATGGCGACGCAGGAGAC
                      ____________________________________________________________
consensus             GGTGCTGGGGTAACGATCGGCGGTGGTTTGATGCTTTGCGGCGATGGCGACGCAGGAGAC
 
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JMFF035C24+           CTCCCGTCTGGTCAGCGCCGTGATAGTGGCGAGCGATGGTGATGGCTTCGGCCGGCGACC
JMFF024J24+           CTCCCGTCTGGTCAGCGCCGTGATAGTGGCGAGCGATGGTGATGGCTTCGGCCGGCGACC
JMFS005F11+           CTCCCGTCTGGTCAGCGCCGTGATAGTGGCGAGCGATGGTGATGGCTTCGGCCGGCGACC
JMSF001O20+           CTCCCGTCTGGTCAGCGCCGTGATAGTGGCGAGCGATGGTGATGGCTTCGGCCGGCGACC
                      ____________________________________________________________
consensus             CTCCCGTCTGGTCAGCGCCGTGATAGTGGCGAGCGATGGTGATGGCTTCGGCCGGCGACC
 
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JMFF035C24+           TCTCACCTCTACGCGTCTCCCTCTCTCTCTCTCTCT                        
JMFF024J24+           TCTCACCTCTACGCGTCTCCCTCTCTCTCTCTCTCT                        
JMFS005F11+           TCTCACCTCTACGCGTCTCCCTCTCTCTCTCTCTCTTGTCTGGCCGCGTGTATGC     
JMSF001O20+           TCTCACCTCTACGCGTCTCCCTCTCTCTCTCTCTCTTGTCTGGCCGCGTGTATGCTGATC
                      ____________________________________________________________
consensus             TCTCACCTCTACGCGTCTCCCTCTCTCTCTCTCTCTTGTCTGGCCGCGTGTATGCTGATC