Contig 009143:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS073B10Sequence624009143 (5)emb|CDP01004.1|2e-64unnamed protein product [Coffea canephora]
JMFS081B08Sequence635009143 (5)emb|CDP01004.1|1e-53unnamed protein product [Coffea canephora]
JMFS110B10Sequence602009143 (5)emb|CDP01004.1|2e-45unnamed protein product [Coffea canephora]
JMFS157C02Sequence559009143 (5)emb|CDP01004.1|2e-36unnamed protein product [Coffea canephora]
JMFS164D03Sequence595009143 (5)emb|CDP01004.1|5e-45unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS073B10+                                                                  GGCGG
                      ____________________________________________________________
consensus                                                                    GGCGG
 
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JMFS073B10+           CGGTGAAGTGCCAGCCTTGAAAATATGCGGCTATCTCAAACCCTAGCAGGACTAAAGATA
JMFS081B08+                                                                AAAGATA
                      ____________________________________________________________
consensus             CGGTGAAGTGCCAGCCTTGAAAATATGCGGCTATCTCAAACCCTAGCAGGACTAAAGATA
 
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JMFS073B10+           AGCAGAGGAAGACCTTTATGCAGGAGAAGAACCGGGTCTTCTCCGCGGAGGCGCCGCTGT
JMFS081B08+           AGCAGAGGAAGACCTTTATGCAGGAGAAGAACCGGGTCTTCTCCGCGGAGGCGCCGCTGT
JMFS110B10+                                                                    TGT
                      ____________________________________________________________
consensus             AGCAGAGGAAGACCTTTATGCAGGAGAAGAACCGGGTCTTCTCCGCGGAGGCGCCGCTGT
 
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JMFS073B10+           CGGTGCGGTCGGTCCTCCCGGAGGCGAGGCGGCGGCGCACGACGGAGGCGAGGCCGAGCA
JMFS081B08+           CGGTGCGGTCGGTCCTCCCGGAGGCGAGGCGGCGGCGCACGACGGAGGCGAGGCCGAGCA
JMFS157C02+                                                   GACGGAGGCGAGGCCGAGCA
JMFS110B10+           CGGTGCGGTCGGTCCTCCCGAAGGCGAGGCGGCGGCGCACGACGGAGGCGAGGCCGAGCA
JMFS164D03+                CGGTCGGTCCTCCCGGAGGCGAGGCGGCGGCGCACGACGGAGGCGAGGCCGAGCA
                      ____________________________________________________________
consensus             CGGTGCGGTCGGTCCTCCCGGAGGCGAGGCGGCGGCGCACGACGGAGGCGAGGCCGAGCA
 
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JMFS073B10+           ATGCGGCGGCAATGGAGGTCAGGCAGCCGGCGGCTTTATGCGCCTTGAGGAGGAGCACCC
JMFS081B08+           ATGCGGCGGCAATGGAGGTCAGGCAGCCGGCGGCTTTATGCGCCTTGAGGAGGAGCACCC
JMFS157C02+           ATGCGNCGGCAATGGAGGTCAGGCAGCCGNCGGCTTTATGCGCCTTGAGGAGGAGCACCC
JMFS110B10+           ATGCGGCGGCAATGGAGGTCAGGCAGCCGGCGGCTTTATGCGCCTTGAGGAGGAGCACCC
JMFS164D03+           ATGCGGCGGCAATGGAGGTCAGGCAGCCGGCGGCTTTATGCGCCTTGAGGAGGAGCACCC
                      ____________________________________________________________
consensus             ATGCGGCGGCAATGGAGGTCAGGCAGCCGGCGGCTTTATGCGCCTTGAGGAGGAGCACCC
 
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JMFS073B10+           AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
JMFS081B08+           AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
JMFS157C02+           AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
JMFS110B10+           AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
JMFS164D03+           AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
                      ____________________________________________________________
consensus             AAGTTAGCTGCTTGGCGTTCTTGTTCCGTACCTTCTCCCGGCGGCGGCGGGCGGCGGGCA
 
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JMFS073B10+           TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
JMFS081B08+           TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
JMFS157C02+           TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
JMFS110B10+           TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
JMFS164D03+           TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
                      ____________________________________________________________
consensus             TTGAGGGATCGTGGTCGTCATCGGCGGCGGCGGCGCAAAGAAAATCCTCCTCCGATGCCC
 
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JMFS073B10+           CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
JMFS081B08+           CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
JMFS157C02+           CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
JMFS110B10+           CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
JMFS164D03+           CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
                      ____________________________________________________________
consensus             CTTCGAGCTCCACCATTGACCAATTATTCGGGTTCTCCATTTTCACCACCACAGGGGTTC
 
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JMFS073B10+           CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
JMFS081B08+           CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
JMFS157C02+           CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
JMFS110B10+           CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
JMFS164D03+           CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
                      ____________________________________________________________
consensus             CCACATGGCTCTCCTTAGCCCACCACCCAAACGGAGCCATTCCACCACTAAAACACCCAA
 
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JMFS073B10+           AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
JMFS081B08+           AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
JMFS157C02+           AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
JMFS110B10+           AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
JMFS164D03+           AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
                      ____________________________________________________________
consensus             AAAGATTCAAACTTTCCCCTCAAAATCAACACAATGCTTAAAACTCACTAAACCCACACC
 
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JMFS073B10+           ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
JMFS081B08+           ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
JMFS157C02+           ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
JMFS110B10+           ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
JMFS164D03+           ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
                      ____________________________________________________________
consensus             ATTTCCAACACAAAAGCACTAAAACATTAAACAAAACCAACGCCCAGTTTCTGCGACTCT
 
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JMFS073B10+           TGAATGCCAAAGAGGAGCT                                         
JMFS081B08+           TGAATGCCAAAGAGGAGCTTATTATATTGTATCTATATGCTGTGAGATTGAGGGCACGAT
JMFS157C02+           TGAATGCCAAAGAGGAGCTTATTATATTGTATCTATATGCTGTGAGATTGAGGGCACGAT
JMFS110B10+           TGAATGCCAAAGAGGAGCTTATTATATTGTATCTATATGCTGTGAGATTGAGGGCACGAT
JMFS164D03+           TGAATGCCAAAGAGGAGCTTATTATATTGTATCTATATGCTGTGAGATTGAGGGCACGAT
                      ____________________________________________________________
consensus             TGAATGCCAAAGAGGAGCTTATTATATTGTATCTATATGCTGTGAGATTGAGGGCACGAT
 
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JMFS081B08+           CGGGTTTTACACAGAGAGAGCAGCACTG                                
JMFS157C02+           CGGGTTTTACACAGAGAGAGCAGCACTGTATACTCCACAGTACAAAGGAATGGAATTAG 
JMFS110B10+           CGGGTTTTACACAGAGAGAGCAGCACTGTATACTCCACAGTACAAAGGAATGGAATTAG 
JMFS164D03+           CGGGTTTTACACAGAGAGAGCAGCACTGTATACTCCACAGTACAAAGGAATGGAATTAGC
                      ____________________________________________________________
consensus             CGGGTTTTACACAGAGAGAGCAGCACTGTATACTCCACAGTACAAAGGAATGGAATTAGC