Contig 009127:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008G12Sequence610009127 (2)ref|XP_006361683.1|1e-69PREDICTED: lysine-specific histone demethylase 1 homolog 3-like [Solanum tubero
JMFS149C01Sequence627009127 (2)ref|XP_006361683.1|2e-29PREDICTED: lysine-specific histone demethylase 1 homolog 3-like [Solanum tubero

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+                                                 CTTAATAGCTGGTGCCACTCCA
                      ____________________________________________________________
consensus                                                   CTTAATAGCTGGTGCCACTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           AAGTTAATATAGCCACGCGAAACTAAGTAGTTATATGCAGAATCCAGTAGAGTACTACAA
                      ____________________________________________________________
consensus             AAGTTAATATAGCCACGCGAAACTAAGTAGTTATATGCAGAATCCAGTAGAGTACTACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           TGCTTCGGAATAATATCAACAAACATATCCTTTGTCATCCAAGTAGACACATTTTCCCGC
                      ____________________________________________________________
consensus             TGCTTCGGAATAATATCAACAAACATATCCTTTGTCATCCAAGTAGACACATTTTCCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           CATTTTGTAATAATATGATTCCTAATGAGAATGTAATTTACCTGTTCAATCCCACCAACC
                      ____________________________________________________________
consensus             CATTTTGTAATAATATGATTCCTAATGAGAATGTAATTTACCTGTTCAATCCCACCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           ATAGAAACAACCCCAGCATCAATTTCCTCATCTGTAAGCGAGTCAGCTGGAAAACCGGCT
JMFS149C01+                                            GTAAGCGAGTCAGCTGNAAAACCGGCT
                      ____________________________________________________________
consensus             ATAGAAACAACCCCAGCATCAATTTCCTCATCTGTAAGCGAGTCAGCTGGAAAACCGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           GTTAGAGCAATCAAGGCCTCGGACGTGGCCTCCTTGTTGATCACGATGATCTCGTCCGAT
JMFS149C01+           GTTAGAGCAATCAAGGCCTCGGACGTGGCCTCCTTGTTGATCACGATGATCTCGTCCGAT
                      ____________________________________________________________
consensus             GTTAGAGCAATCAAGGCCTCGGACGTGGCCTCCTTGTTGATCACGATGATCTCGTCCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           ACGTCAGCAGCGCTTTGTCTTTGCACAGCGGAATTGGTGACAGCATTAGGGTCTCCAACT
JMFS149C01+           ACGTCAGCAGCGCTTTGTCTTTGCACAGCGGAATTGGTGACAGCATTAGGGTCTCCAACT
                      ____________________________________________________________
consensus             ACGTCAGCAGCGCTTTGTCTTTGCACAGCGGAATTGGTGACAGCATTAGGGTCTCCAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           CCATTAATTCTCGAGAAATTGGGATTTTCTGACAGGGGTCCGAGAAATTGTACATTATTA
JMFS149C01+           CCATTAATTCTCGAGAAATTGGGATTTTCTGACAGGGGTCCGAGAAATTGTACATTATTA
                      ____________________________________________________________
consensus             CCATTAATTCTCGAGAAATTGGGATTTTCTGACAGGGGTCCGAGAAATTGTACATTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           TATACCTGGTTCGACGCTGTGGTATTTCGAGGACGGCCTTGCCTTCGCTTCCGCGGAATG
JMFS149C01+           TATACCTGGTTCGACGCTGTGGTATTTCGAGGACGGCCTTGCCTTCGCTTCCGCGGAATG
                      ____________________________________________________________
consensus             TATACCTGGTTCGACGCTGTGGTATTTCGAGGACGGCCTTGCCTTCGCTTCCGCGGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           GAGAGAGATATCAATTGTTGAGTGATTGAGGTATTAGGGTTGTGATCATAAATTGGGATT
JMFS149C01+           GAGAGAGATATCAATTGTTGAGTGATTGAGGTATTAGGGTTGTGATCATAAATTGGGATT
                      ____________________________________________________________
consensus             GAGAGAGATATCAATTGTTGAGTGATTGAGGTATTAGGGTTGTGATCATAAATTGGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS008G12+           GGATTGAAACTGTGGTTAGGGTTTGGAATGGGGTTTGATTGCGGCAAA            
JMFS149C01+           GGATTGAAACTGTGGTTAGGGTTTGGAATGGGGTTTGATTGCGGCAAATGGATTGTGAAA
                      ____________________________________________________________
consensus             GGATTGAAACTGTGGTTAGGGTTTGGAATGGGGTTTGATTGCGGCAAATGGATTGTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS149C01+           TGTAGCGGGTTGTTACTGGTAATGTACGGCTGGTCCTGATTAGGGGTTTGGTTTGATGGA
                      ____________________________________________________________
consensus             TGTAGCGGGTTGTTACTGGTAATGTACGGCTGGTCCTGATTAGGGGTTTGGTTTGATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS149C01+           TCCATATCTGTGTGTTTGTGAGCTTCTCACTTCAGTACAGAGCTGGAACACGATGGCGAA
                      ____________________________________________________________
consensus             TCCATATCTGTGTGTTTGTGAGCTTCTCACTTCAGTACAGAGCTGGAACACGATGGCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS149C01+           GAAGACGACGATGTAACCCGTACCCGGATTCAGTCAATCGGGTTCATAACCCGGTATCGA
                      ____________________________________________________________
consensus             GAAGACGACGATGTAACCCGTACCCGGATTCAGTCAATCGGGTTCATAACCCGGTATCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS149C01+           TTGGTTAGGGACTTCGGGTTCCGGTGGCATCCGTCTACAGAAAATTGAAGAACTCACTTC
                      ____________________________________________________________
consensus             TTGGTTAGGGACTTCGGGTTCCGGTGGCATCCGTCTACAGAAAATTGAAGAACTCACTTC