Contig 009125:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013J23Sequence508011877 (5)620009125 (7)ref|XP_009778431.1|8e-65PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFF033N22Sequence510011877 (5)ref|XP_004233034.1|2e-06PREDICTED: U-box domain-containing protein 17 [Solanum lycopersicum]748009125 (7)ref|XP_009778431.1|3e-91PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFF039D05Sequence532011877 (5)ref|NP_001275105.1|2e-09ACRE 276-like protein [Solanum tuberosum] gb|ABK96801.1| ACRE 276-like protein [645009125 (7)ref|XP_009778431.1|3e-72PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFN039N17Sequence619009125 (7)ref|XP_009778431.1|5e-82PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFS147A12Sequence546009125 (7)ref|XP_009778431.1|4e-24PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMSF003C20Sequence313011877 (5)768009125 (7)ref|XP_009778431.1|3e-121PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMSF032P15Sequence667011877 (5)ref|XP_004233034.1|1e-21PREDICTED: U-box domain-containing protein 17 [Solanum lycopersicum]680009125 (7)ref|XP_009778431.1|1e-94PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF003C20+             CGNATTATGGACGAAATCGGGTGTCTAGAATTGATAGTTGGAGTTTTAAGGTTCGGG
                      ____________________________________________________________
consensus                CGNATTATGGACGAAATCGGGTGTCTAGAATTGATAGTTGGAGTTTTAAGGTTCGGG
 
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rJMSF003C20+          CACACGTCGGAGGCGAGGGAAAACTCTGCAGCGACATTATTCAGCCTCTCCGCTGTTCAC
                      ____________________________________________________________
consensus             CACACGTCGGAGGCGAGGGAAAACTCTGCAGCGACATTATTCAGCCTCTCCGCTGTTCAC
 
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rJMSF003C20+          GACTATAAGAAAAGAATTGCGGAACAAGATGGCGGAGTAGAAGCATTGGCGGGGCTGTTG
rJMSF032P15+                 AGAAAAGAATTGCGGAACAAGATGGCGGAGTAGAAGCATTGGCGGGGCTGTTG
rJMFF033N22+                 AGAAAAGAATTGCGGAACAAGATGGCGGAGTAGAAGCATTGGCGGGGCTGTTG
                      ____________________________________________________________
consensus             GACTATAAGAAAAGAATTGCGGAACAAGATGGCGGAGTAGAAGCATTGGCGGGGCTGTTG
 
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rJMSF003C20+          AGAGATGGGTCACTGAGAGGGAAAAAGGATGCGGTGACAGCTCTATTCAACTTATCTACT
JMFN039N17-            GAGATGGGTCACTGAGAGGGAAAAAGGATGCGGTGACAGCTCTATTCAACTTATCTACT
rJMSF032P15+          AGAGATGGGTCACTGAGAGGGAAAAAGGATGCGGTGACAGCTCTATTCAACTTATCTACT
rJMFF039D05+                                                        TCAACTTATNTACT
rJMFF033N22+          AGAGATGGGTCACTGAGAGGGAAAAAGGATGCGGTGACAGCTNTATTCAACTTATCTACT
                      ____________________________________________________________
consensus             AGAGATGGGTCACTGAGAGGGAAAAAGGATGCGGTGACAGCTCTATTCAACTTATCTACT
 
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rJMSF003C20+          CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
JMFN039N17-           CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
rJMSF032P15+          CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
rJMFF039D05+          CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
rJMFF033N22+          CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
rJMFF013J23+                           GAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
                      ____________________________________________________________
consensus             CACACGGAGAACTGCGCGAGAATGATAGATTCCGGAGCTGTCAACGCGTTAGTCGGGGCG
 
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rJMSF003C20+          TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
JMFN039N17-           TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
rJMSF032P15+          TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
rJMFF039D05+          TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
rJMFF033N22+          TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
rJMFF013J23+          TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
                      ____________________________________________________________
consensus             TTGGGATGCGAAGGGGTAGCCGAAGAAGCAGCCGGTGCGTTGGCACTGATTGTCAGGCAG
 
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rJMSF003C20+          CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
JMFN039N17-           CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
rJMSF032P15+          CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
rJMFF039D05+          CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
rJMFF033N22+          CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
rJMFF013J23+          CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
                      ____________________________________________________________
consensus             CCAATCGGGGCAGCCGCAGTTGGGAAGGAAGAAACAGCGGTGGCAGGGCTAATCGGGATG
 
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rJMSF003C20+          ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
JMFN039N17-           ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
rJMSF032P15+          ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
rJMFF039D05+          ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
rJMFF033N22+          ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
rJMFF013J23+          ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
                      ____________________________________________________________
consensus             ATGAGATGCGGGACGCCTAAAGGGAAAGAGAACGCAGTTGCAGCGTTGCTCGAGCTGTGT
 
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rJMSF003C20+          CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
JMFN039N17-           CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
rJMSF032P15+          CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
rJMFF039D05+          CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
rJMFF033N22+          CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
rJMFF013J23+          CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
JMFS147A12-                                                                 GGATTG
                      ____________________________________________________________
consensus             CGAAGCGGCGGGGAAGCTGCAACCGAGAGGGTGTTAAAGGCACCTGCCTTGGCAGGATTG
 
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rJMSF003C20+          CTTCAGTCGCTGCTCTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
JMFN039N17-           CTTCAGTCGCTGCTCTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
rJMSF032P15+          CTTCAGTCGCTGCTNTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
rJMFF039D05+          CTTCAGTCGCTGCTNTTCACCGGGACAAAACGGGCGCGGAGAAAAGCAGCATCGCTCGCC
rJMFF033N22+          CTTCAGTCGCTGCTNTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
rJMFF013J23+          CTTCAGTCGCTGCTNTTCACCGGGACAAAACGGGCGCGGAGAAAAGCAGCATCGCTCGCC
JMFS147A12-           CTTCAGTCGCTGCTCTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
                      ____________________________________________________________
consensus             CTTCAGTCGCTGCTCTTCACCGGGACAAAACGCGCGCGGAGAAAAGCAGCATCGCTCGCC
 
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rJMSF003C20+          CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
JMFN039N17-           CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
rJMSF032P15+          CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
rJMFF039D05+          CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
rJMFF033N22+          CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
rJMFF013J23+          CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
JMFS147A12-           CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
                      ____________________________________________________________
consensus             CGGGTTTTCCAGCGGTGTGAGCACGCCTCGATGCACTATGGCGGGTTGGGCGTAGGATAT
 
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rJMSF003C20+          GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
JMFN039N17-           GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGNT
rJMSF032P15+          GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
rJMFF039D05+          GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
rJMFF033N22+          GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
rJMFF013J23+          GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
JMFS147A12-           GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
                      ____________________________________________________________
consensus             GCATTTGCAGGAAACTCGGCCACCACTAGAGATACAACTTTTGCGAGTGATGTCTCGGTG
 
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rJMSF003C20+          CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGT         
JMFN039N17-           GCAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
rJMSF032P15+          CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
rJMFF039D05+          CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
rJMFF033N22+          CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
rJMFF013J23+          CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
JMFS147A12-           CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
                      ____________________________________________________________
consensus             CAAATGTCCATTTCTGTGCCAGTATTATAATGGTAACCATCCATCATCTGTTGTTCTCCC
 
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JMFN039N17-           CTC                                                         
rJMSF032P15+          CTCCATTATGTAACCTTTTT                                        
rJMFF039D05+          CTCCATTATGTAACCTTTTTTTGTTTGTAATACTCGAAAAAAAAAATTCTTTTATTGATC
rJMFF033N22+          CTCCATTATGTAACCTTTTTTTGTTTGTAATACTCGAAAAAAAAAATTCTTTTATTGATC
rJMFF013J23+          CTCCATTATGTAACCTTTTTTTGTTTGTAATACTCGAAAAAAAAAATTCTTTTATTGATC
JMFS147A12-           CTCCATTATGTAACCTTTTTTTGTTTGTAATACTCGAAAAAAAAAATTCTTTTATTGATC
                      ____________________________________________________________
consensus             CTCCATTATGTAACCTTTTTTTGTTTGTAATACTCGAAAAAAAAAATTCTTTTATTGATC
 
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rJMFF039D05+          TATAAATGCCACAAAATAAAAAGATTAGAAA                             
rJMFF033N22+          TATAAATGCCACAAAATAAAAAGATTAGAAA                             
rJMFF013J23+          TATAAAT-CCACAAAATAAAAAGATTAGAAA                             
JMFS147A12-           TATAAATGCCACAAAATAAAAAGATTAGAAATGCCATACATCAATTCAATTAGTCTCTCT
                      ____________________________________________________________
consensus             TATAAATGCCACAAAATAAAAAGATTAGAAATGCCATACATCAATTCAATTAGTCTCTCT
 
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JMFS147A12-           GTGCTTTTTTGTATTGGGGTGAAATATGATCATATAATGGAGTTGTAATGCCTTTTTGTT
                      ____________________________________________________________
consensus             GTGCTTTTTTGTATTGGGGTGAAATATGATCATATAATGGAGTTGTAATGCCTTTTTGTT
 
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JMFS147A12-           GCAAGGCTCATTAGATCCAACAGGAAATCATAGGCAGTGATAATGCAACTTGGTACTTGC
                      ____________________________________________________________
consensus             GCAAGGCTCATTAGATCCAACAGGAAATCATAGGCAGTGATAATGCAACTTGGTACTTGC
 
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JMFS147A12-           CATAGTTTATGAATCCGTATTTTATCCAAATTTTCATATTGTTCTAATATACGCATTCCG
                      ____________________________________________________________
consensus             CATAGTTTATGAATCCGTATTTTATCCAAATTTTCATATTGTTCTAATATACGCATTCCG