| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A17 | Sequence | 589 | 009117 (12) | emb|CDP09484.1| | 8e-106 | unnamed protein product [Coffea canephora] | 805 | 002749 (10) | dbj|BAC22124.1| | 2e-118 | t-complex polypeptide 1 [Bruguiera sexangula] |
| JMFF028J13 | Sequence | 560 | 009117 (12) | emb|CDP09484.1| | 5e-98 | unnamed protein product [Coffea canephora] | 628 | 002749 (10) | ref|XP_010089252.1| | 3e-77 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMFF029K01 | Sequence | 437 | 009117 (12) | gb|KDO55004.1| | 3e-66 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | 747 | 002749 (10) | ref|XP_010089252.1| | 3e-101 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMFF037N03 | Sequence | 597 | 009117 (12) | gb|KDO55004.1| | 6e-107 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | 762 | 002749 (10) | ref|XP_010089252.1| | 1e-112 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMFF044A21 | Sequence | 628 | 009117 (12) | gb|KDO55004.1| | 3e-113 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | 582 | 002749 (10) | ref|XP_010089252.1| | 2e-64 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMFS139C12 | Sequence | 627 | 009117 (12) | gb|KDO55004.1| | 8e-118 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | |||||
| JMFS140B07 | Sequence | 623 | 009117 (12) | emb|CDP09484.1| | 1e-104 | unnamed protein product [Coffea canephora] | |||||
| JMSF002F16 | Sequence | 264 | 009117 (12) | gb|KDO55004.1| | 1e-24 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | 769 | 002749 (10) | ref|XP_010089252.1| | 8e-104 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMSF019H12 | Sequence | 541 | 009117 (12) | emb|CDP09484.1| | 2e-93 | unnamed protein product [Coffea canephora] | 774 | 002749 (10) | dbj|BAC22124.1| | 1e-118 | t-complex polypeptide 1 [Bruguiera sexangula] |
| JMSF021D05 | Sequence | 664 | 009117 (12) | emb|CDP09484.1| | 3e-123 | unnamed protein product [Coffea canephora] | 588 | 015026 | ref|XP_002265581.2| | 159 | PREDICTED: uncharacterized protein LOC100263463 [Vitis vinifera] |
| JMSF029G02 | Sequence | 661 | 009117 (12) | gb|KDO55004.1| | 7e-120 | hypothetical protein CISIN_1g015935mg [Citrus sinensis] | 755 | 002749 (10) | ref|XP_010089252.1| | 2e-115 | T-complex protein 1 subunit alpha [Morus notabilis] gb|EXB37577.1| T-complex pro |
| JMSF052C06 | Sequence | 664 | 009117 (12) | emb|CDP09484.1| | 2e-123 | unnamed protein product [Coffea canephora] | 896 | 002749 (10) | dbj|BAC22124.1| | 1e-133 | t-complex polypeptide 1 [Bruguiera sexangula] |
This contig is upended
. : . : . : . : . : . :
JMFS139C12+ GCTTGTACTGC
JMFF044A21+ ACTGC
JMSF021D05+ TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
JMSF052C06+ TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
JMSF029G02+ GCTTGTACTGC
____________________________________________________________
consensus TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
. : . : . : . : . : . :
JMFS139C12+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFF044A21+ TTCAACAACCAGGTTGCANAAGAAATCACTGTCACCAGAAATCAACTNTGATGACATGCT
JMFF012A17+ TCAACTTTGATGACATGCT
JMSF021D05+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFF037N03+ ACCAGAAATCAACTTTGATGACATGCT
JMSF052C06+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMSF029G02+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFS140B07+ GAAATCAACTTTGATGACATGCT
____________________________________________________________
consensus TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
. : . : . : . : . : . :
JMFS139C12+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF044A21+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF012A17+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF021D05+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF037N03+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF028J13+ CAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF019H12+ TCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF052C06+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF029G02+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFS140B07+ TGTCTTGGCACAATNTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
____________________________________________________________
consensus TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
. : . : . : . : . : . :
JMFS139C12+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF044A21+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF012A17+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF021D05+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF037N03+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF028J13+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF019H12+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF052C06+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF029G02+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFS140B07+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
____________________________________________________________
consensus CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
. : . : . : . : . : . :
JMFS139C12+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF044A21+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF012A17+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF021D05+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF037N03+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF028J13+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF019H12+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF029K01+ TTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF052C06+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF029G02+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFS140B07+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
____________________________________________________________
consensus GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
. : . : . : . : . : . :
JMFS139C12+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF044A21+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF012A17+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF021D05+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF037N03+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF028J13+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF019H12+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF029K01+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF052C06+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF029G02+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFS140B07+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
____________________________________________________________
consensus GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
. : . : . : . : . : . :
JMFS139C12+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF044A21+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF012A17+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF021D05+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF037N03+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF028J13+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF019H12+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF029K01+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF052C06+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF029G02+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFS140B07+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
____________________________________________________________
consensus AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
. : . : . : . : . : . :
JMFS139C12+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF044A21+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF012A17+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF021D05+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF037N03+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF028J13+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF019H12+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF029K01+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF002F16+ ACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF052C06+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF029G02+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFS140B07+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGGCGGGACCAAGTGA
____________________________________________________________
consensus GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
. : . : . : . : . : . :
JMFS139C12+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF044A21+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF012A17+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF021D05+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF037N03+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF028J13+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF019H12+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF029K01+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF002F16+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF052C06+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF029G02+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFS140B07+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
____________________________________________________________
consensus CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
. : . : . : . : . : . :
JMFS139C12+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF044A21+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF012A17+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF021D05+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF037N03+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF028J13+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF019H12+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF029K01+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF002F16+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF052C06+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF029G02+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFS140B07+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
____________________________________________________________
consensus GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
. : . : . : . : . : . :
JMFS139C12+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF044A21+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF012A17+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF021D05+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF037N03+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF028J13+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF019H12+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF029K01+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF002F16+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF052C06+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF029G02+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFS140B07+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
____________________________________________________________
consensus GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
. : . : . : . : . : . :
JMFS139C12+ CCTTTGAAAGAAATAA
JMFF044A21+ CCTTTGAAAGAAATAAGCGCTGT
JMFF012A17+ CCTTTGAAAGAAATAAGCGCTGTGTA
JMSF021D05+ CCTTTGAAAGAAATAAGCGCTGTGTATAC
JMFF037N03+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMFF028J13+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF019H12+ CCTTTGAAAGAAATAAGCGCTGTGTATAC
JMFF029K01+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF002F16+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF052C06+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF029G02+ CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGG
JMFS140B07+ CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGGCAGAGCAACTGAGGTTTTT
____________________________________________________________
consensus CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGGCAGAGCAACTGAGGTTTTT