Contig 009116:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS139D07Sequence626009116 (2)ref|XP_009771290.1|2e-33PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]
JMFS150C12Sequence615009116 (2)ref|XP_009771290.1|2e-32PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS150C12+                                       ATCAAGGCNTGCATGATCTATAAGTTCAGGCT
JMFS139D07+                                      AATCAAGGCCTGCATGATCTATAAGTTCAGGCT
                      ____________________________________________________________
consensus                                        AATCAAGGCCTGCATGATCTATAAGTTCAGGCT
 
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JMFS150C12+           GTGGCATATGCAGTGCCGCTGGCATCCAATTCAAGAACCTTATGTATGTTCTTATGTCCA
JMFS139D07+           GTGGCATATGCAGTGCCGCTGGCATCCAATTCAAGAACCTTATGTATGTTCTTATGTCCA
                      ____________________________________________________________
consensus             GTGGCATATGCAGTGCCGCTGGCATCCAATTCAAGAACCTTATGTATGTTCTTATGTCCA
 
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JMFS150C12+           AATTCACAAAGTTCCGGACTACAGGTCCACATTTTCTTGGGCTTGCTCGTGTACCCTTCA
JMFS139D07+           AATTCACAAAGTTCCGGACTACAGGTCCACATTTTCTTGGGCTTGCTCGTGTACCCTTCA
                      ____________________________________________________________
consensus             AATTCACAAAGTTCCGGACTACAGGTCCACATTTTCTTGGGCTTGCTCGTGTACCCTTCA
 
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JMFS150C12+           AATACCATTTTGGGAAGTACACTCTATCGTTAACTGGTTGAATTCGCAGAACTGCAAACG
JMFS139D07+           AATACCATTTTGGGAAGTACACTCTATCGTTAACTGGTTGAATTCGCAGAACTGCAAACG
                      ____________________________________________________________
consensus             AATACCATTTTGGGAAGTACACTCTATCGTTAACTGGTTGAATTCGCAGAACTGCAAACG
 
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JMFS150C12+           CCAAAAGAAATGCAAATGCTGACATAAGGTTGATGGCAGCTGAAAAAATAATGTCCTCTT
JMFS139D07+           CCAAAAGAAATGCAAATGCTGACATAAGGTTGATGGCAGCTGAAAAAATAATGTCCTCTT
                      ____________________________________________________________
consensus             CCAAAAGAAATGCAAATGCTGACATAAGGTTGATGGCAGCTGAAAAAATAATGTCCTCTT
 
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JMFS150C12+           CAGCAGCCATTTTTGCCCCAAACTTGTTGTATCTTCTAACCTGTTAACTTTGGGGTGAGA
JMFS139D07+           CAGCAGCCATTTTTGCCCCAAAATTGTTGTATCTTCTAAC-------CTTTGGGGTGAGA
                      ____________________________________________________________
consensus             CAGCAGCCATTTTTGCCCCAAACTTGTTGTATCTTCTAACCTGTTAACTTTGGGGTGAGA
 
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JMFS150C12+           TAAAGTTGTAAAAGAAGTCAGTCCCTCCTTGTAACTTCTTCTTCAGCTCCTCTCTTATTC
JMFS139D07+           TAAAGTTGTAAAAGAAGTCAGTCCCTCCTTGTAACTTCTTCTTCAGCTCCTCTCTTATTC
                      ____________________________________________________________
consensus             TAAAGTTGTAAAAGAAGTCAGTCCCTCCTTGTAACTTCTTCTTCAGCTCCTCTCTTATTC
 
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JMFS150C12+           TTATCCTGAAACAATGTGGATTGTTACCTGGGTGGTCGTGTCGGTAAAATAGAAAAAGCA
JMFS139D07+           TTATCCTGAAACAATGTGGATTGTTACCTGGGTGGTCGTGTCGGTAAAATAGAAAAAGCA
                      ____________________________________________________________
consensus             TTATCCTGAAACAATGTGGATTGTTACCTGGGTGGTCGTGTCGGTAAAATAGAAAAAGCA
 
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JMFS150C12+           AGATTGCAGAAGAATTTGTGGCCACCTCGTCCTCTGACTCTTGATAATCAGGAAATATTT
JMFS139D07+           AGATTGCAGAAGAATTTGTGGCCACCTCGTCCTCTGACTCTTGATAATCAGGAAATATTT
                      ____________________________________________________________
consensus             AGATTGCAGAAGAATTTGTGGCCACCTCGTCCTCTGACTCTTGATAATCAGGAAATATTT
 
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JMFS150C12+           ATTATTGTGTTGCCCTTTCTGGCTAGCCAGCCCTTCAGGCAGGCAGCCAGACAAACAAAG
JMFS139D07+           ATTATTGTGTTGCCCTTTCTGGCTAGCCAGCCCTTCAGGCAGGCAGCCAGACAAACAAAG
                      ____________________________________________________________
consensus             ATTATTGTGTTGCCCTTTCTGGCTAGCCAGCCCTTCAGGCAGGCAGCCAGACAAACAAAG
 
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JMFS150C12+           CCTTTCTTTCCCTGCAGGGGAATACGAAAGATATTGCAGAG                   
JMFS139D07+           CCTTTCTTTCCCTGCAGGGGAATACGAAAGATATTGCAGAGCTTCTTGAGAAGGGAGAAA
                      ____________________________________________________________
consensus             CCTTTCTTTCCCTGCAGGGGAATACGAAAGATATTGCAGAGCTTCTTGAGAAGGGAGAAA