Contig 009105:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS014A04Sequence571009105 (6)
JMFS029A12Sequence607009105 (6)ref|XP_002284507.1|5e-28PREDICTED: ethylene receptor 2-like [Vitis vinifera]
JMFS048B01Sequence544009105 (6)
JMFS079D07Sequence617009105 (6)ref|XP_006350680.1|4e-19PREDICTED: ethylene receptor 2-like [Solanum tuberosum]
JMFS086B10Sequence603009105 (6)ref|XP_006350680.1|4e-11PREDICTED: ethylene receptor 2-like [Solanum tuberosum]
JMFS130E04Sequence627009105 (6)

Alignment

This contig is upended


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JMFS029A12+                                               GAACGGGACATTCGAGCAGCTGAT
                      ____________________________________________________________
consensus                                                 GAACGGGACATTCGAGCAGCTGAT
 
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JMFS029A12+           GAAGTAAATGAGCTCAATCGGGATGGAAAAATAGGCCACCGCAATCAAAAAGTCGCTAAC
JMFS079D07+                         CAATCGGGATGGAAAAATAGGCCACCGCAATCAAAAAGTCGCTAAC
                      ____________________________________________________________
consensus             GAAGTAAATGAGCTCAATCGGGATGGAAAAATAGGCCACCGCAATCAAAAAGTCGCTAAC
 
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JMFS029A12+           TTTTTGGCACTCCAAAATGTTCTCAATGCTCCAAAACCCCTCGTACTCACAATTACACCG
JMFS079D07+           TTTTTGGCACTCCAAAATGTTCTCAATGCTCCAAAACCCCTCGTACTCACAATTACACCG
JMFS086B10+            TTTTGGCACTCCAAAATGTTCTCAATGCTCCAAAACCCCTCGTACTCACAATTACACCG
                      ____________________________________________________________
consensus             TTTTTGGCACTCCAAAATGTTCTCAATGCTCCAAAACCCCTCGTACTCACAATTACACCG
 
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JMFS029A12+           AGCAAACCCATTATCCGCAGCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAA
JMFS079D07+           AGCAAACCCATTATCCGCAGCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAA
JMFS086B10+           AGCAAACCCATTATCCGCAGCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAA
JMFS014A04+                                                ACCGACAAAACCAACAGCTTCAA
                      ____________________________________________________________
consensus             AGCAAACCCATTATCCGCAGCTGCTACCGCAATGTGGACCGACAAAACCAACAGCTTCAA
 
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JMFS029A12+           CACCGACATCCTCAACATCGTACCTTATATCCTACAT---TTAATCCATTTCTTGGAACT
JMFS079D07+           CACCGACATCCTCAACATCGTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACT
JMFS086B10+           CACCGACATCCTCAACATCGTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACT
JMFS014A04+           CACCGACATCCTCAACATCGTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACT
JMFS130E04+                                          CTACATTCCTTAATCCATTTCTTGGAACT
                      ____________________________________________________________
consensus             CACCGACATCCTCAACATCGTACCTTATATCCTACATTCCTTAATCCATTTCTTGGAACT
 
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JMFS029A12+           CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
JMFS079D07+           CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
JMFS086B10+           CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
JMFS014A04+           CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
JMFS130E04+           CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
                      ____________________________________________________________
consensus             CACCAGTGCCACCCGAATCAATCTCGACGAAAAACTTCATAGTTCATACATCCTCCCTCC
 
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JMFS029A12+           TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
JMFS079D07+           TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
JMFS086B10+           TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
JMFS014A04+           TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
JMFS048B01+                   TGAAATTCTCACATCCCCACNTGAAATTGGAAGAGCAGAACAAACCCCAAGA
JMFS130E04+           TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
                      ____________________________________________________________
consensus             TGTCAATCTGAAATTCTCACATCCCCACTTGAAATTGGAAGAGCAGAACAAACCCCAAGA
 
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JMFS029A12+           ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
JMFS079D07+           ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
JMFS086B10+           ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
JMFS014A04+           ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
JMFS048B01+           ACANCCACTCCNCAGATCTCATCTTTCACCCCCTCAACATCCACACACATATATAAAGGC
JMFS130E04+           ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
                      ____________________________________________________________
consensus             ACATCCACTCCTCAGATCTCATCTTTCACCCCCACAACATCCACACACATATATAAATGC
 
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JMFS029A12+           ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
JMFS079D07+           ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
JMFS086B10+           ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
JMFS014A04+           ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
JMFS048B01+           ATACACAGATTTCATANTTTTCCCCCTTGCTACTGCTCTCCTAAAACGACAAGATAAACC
JMFS130E04+           ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
                      ____________________________________________________________
consensus             ATACACATATTTCATACTTCTCCCCCTCGC-ATTGCTCTCTCAAAACGACAAGAGAAACC
 
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JMFS029A12+           GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
JMFS079D07+           GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
JMFS086B10+           GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
JMFS014A04+           GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
JMFS048B01+           GCCTGTTGTCCCCCAGCACCTCCGCCGCCACCGTAGGAGAATCTTCAAAGATCCAGCCGT
JMFS130E04+           GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
                      ____________________________________________________________
consensus             GCC-GTTTTCCCCCAGCACCACCGCCGCCACCGGAGGAGAATCTTCAAAGATCCAGCCGT
 
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JMFS029A12+           ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCG            
JMFS079D07+           ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCGTGGCGAGCTTAG
JMFS086B10+           ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCGTGGCGAGCTTAG
JMFS014A04+           ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCGTGGCGAGCTTAG
JMFS048B01+           ACACAAACCGGGTACCACATTAGCACCCAGTTTNCGCACTCTAAAGCTTGGCTAGCTTAG
JMFS130E04+           ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCGTGGCGAGCTTAG
                      ____________________________________________________________
consensus             ACACAAACCGGGTACCACATTAGCACCCAGTTTCTGCACTCCAAAGCGTGGCGAGCTTAG
 
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JMFS079D07+           CAGAGCAGGCCAAAAATGGGGGGGTTTTATTCA                           
JMFS086B10+           CAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAAAG          
JMFS014A04+           CAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAAAGCTGCAGTTCC
JMFS048B01+           CAGAGCAGGCCAAAAATGGGGGGGTT                                  
JMFS130E04+           CAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAAAGCTGCAGTTCC
                      ____________________________________________________________
consensus             CAGAGCAGGCCAAAAATGGGGGGGTTTTATTCACTCCCTACCCATCAAAGCTGCAGTTCC
 
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JMFS014A04+           CATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATGAATACTAGATTC
JMFS130E04+           CATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATGAATACTAGATTC
                      ____________________________________________________________
consensus             CATACACCCAACCATAAATACACATAAATATTATATTTAGTACACATGAATACTAGATTC
 
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JMFS014A04+           AATGTTT                                                     
JMFS130E04+           AATGTTTTGTTTATGTCATTCTCCAAGATTTTACCTAAGCTCTTATGTTATGTAAATAAA
                      ____________________________________________________________
consensus             AATGTTTTGTTTATGTCATTCTCCAAGATTTTACCTAAGCTCTTATGTTATGTAAATAAA
 
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JMFS130E04+           TACTGTACTATGTTATACTAGTGTGTATATATATATATATATACATATATATAGAGAGAG
                      ____________________________________________________________
consensus             TACTGTACTATGTTATACTAGTGTGTATATATATATATATATACATATATATAGAGAGAG