Contig 009089:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS092A05Sequence623009089 (2)gb|AAV88068.1|2e-85NBS-LRR protein [Ipomoea batatas]
JMFS118C08Sequence612009089 (2)gb|AAV88068.1|2e-73NBS-LRR protein [Ipomoea batatas]

Alignment

This contig is upended


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JMFS092A05+                                                     ATATAATCCAGACCTTCA
                      ____________________________________________________________
consensus                                                       ATATAATCCAGACCTTCA
 
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JMFS092A05+           AACCATTGTGCTACAGATATGTATCTCAAGAAAATGAAATCCCCAAAATGCATTTGCATT
                      ____________________________________________________________
consensus             AACCATTGTGCTACAGATATGTATCTCAAGAAAATGAAATCCCCAAAATGCATTTGCATT
 
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JMFS092A05+           CTTCGGAAGAATGGAGGTGGAACAGAAGCTAAAACTCTTAACAGCTTGAGAGGTACAGAA
                      ____________________________________________________________
consensus             CTTCGGAAGAATGGAGGTGGAACAGAAGCTAAAACTCTTAACAGCTTGAGAGGTACAGAA
 
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JMFS092A05+           ATTTCAGGATTTTCATGAAAGAAGAAAATGGAGCGAGAGTTAATTGTATCAAACAACACA
                      ____________________________________________________________
consensus             ATTTCAGGATTTTCATGAAAGAAGAAAATGGAGCGAGAGTTAATTGTATCAAACAACACA
 
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JMFS092A05+           TAATAGTCAAAACTATGTGTGTATAAACTCAACCAACGGCATGAATTTGCAAATGCATTT
JMFS118C08+                                                           GCAAATGCATTT
                      ____________________________________________________________
consensus             TAATAGTCAAAACTATGTGTGTATAAACTCAACCAACGGCATGAATTTGCAAATGCATTT
 
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JMFS092A05+           AATGAAACTCCTGGAAATTGCATAATATTTACTGCACATAAAATACCTCCTTTTTGAGCT
JMFS118C08+           AATGAAACTCCTGGAAATTGCATAATATTTACTGCACATAAAATACCTCCTTTNTGAGCT
                      ____________________________________________________________
consensus             AATGAAACTCCTGGAAATTGCATAATATTTACTGCACATAAAATACCTCCTTTTTGAGCT
 
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JMFS092A05+           TCTCCTACACAGAAAGTATGCATGTTACCATGCATCTTACAAGTCTTAATTTTGCCATTT
JMFS118C08+           TCTCCTACACAGAAAGTATGCATGTTACCATGCATCTTACAAGTCTTAATTTTGCCATTT
                      ____________________________________________________________
consensus             TCTCCTACACAGAAAGTATGCATGTTACCATGCATCTTACAAGTCTTAATTTTGCCATTT
 
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JMFS092A05+           GAGCCCCGGCTACTAATTAAGATAAGACTTCTATCAACAAGCTCTTGTAAATACTCATAA
JMFS118C08+           GAGCCCCGGCTACTAATTAAGATAAGACTTCTATCAACAAGCTCTTGTAAATACTCATAA
                      ____________________________________________________________
consensus             GAGCCCCGGCTACTAATTAAGATAAGACTTCTATCAACAAGCTCTTGTAAATACTCATAA
 
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JMFS092A05+           GCTACATTTTCCAACTCTTTATGCTCCAATAGCTCCACAAATCCCTCAGCAACCCACAAT
JMFS118C08+           GCTACATTTTCCAACTCTTTATGCTCCAACAGCTCCACAAATCCCTCAGCAACCCACAAT
                      ____________________________________________________________
consensus             GCTACATTTTCCAACTCTTTATGCTCCAATAGCTCCACAAATCCCTCAGCAACCCACAAT
 
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JMFS092A05+           CTAATAAGCGTTTTAACTGAGATTTCACTGCGTTTTGGGAAGACTCCAAAATATAGAAAG
JMFS118C08+           CTAATAAGCGTTTTAACTGAGATTTCACTGCGTTTTGGGAAGACTCCAAAATATAGAAAG
                      ____________________________________________________________
consensus             CTAATAAGCGTTTTAACTGAGATTTCACTGCGTTTTGGGAAGACTCCAAAATATAGAAAG
 
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JMFS092A05+           CAAACATTCACATATTTTGGCAATTGATTGTATATGCGAGCAAGTACACTTCGATCTAGA
JMFS118C08+           CAAACATTCACATATTTTGGCAATTGATTGTATATGCGAGCAAGTACACTTCGATCTAGA
                      ____________________________________________________________
consensus             CAAACATTCACATATTTTGGCAATTGATTGTATATGCGAGCAAGTACACTTCGATCTAGA
 
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JMFS092A05+           ACTCC                                                       
JMFS118C08+           ACTCCCAGCAACTCTAATTCCTTTTCAATCTTCTTCCATTCTTGTTGTATGTTGTTGCAT
                      ____________________________________________________________
consensus             ACTCCCAGCAACTCTAATTCCTTTTCAATCTTCTTCCATTCTTGTTGTATGTTGTTGCAT
 
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JMFS118C08+           TTTGATAAACGCTTTGCAACTTCAACAATTAATTGTGGTAATCCTTCACATTTCTCCAAA
                      ____________________________________________________________
consensus             TTTGATAAACGCTTTGCAACTTCAACAATTAATTGTGGTAATCCTTCACATTTCTCCAAA
 
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JMFS118C08+           ACCTCACTCCTAATTTTTTCAAATTTAGGTGCCATAGATTCTTTGGGAGAAAGGATATTG
                      ____________________________________________________________
consensus             ACCTCACTCCTAATTTTTTCAAATTTAGGTGCCATAGATTCTTTGGGAGAAAGGATATTG
 
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JMFS118C08+           CAGAATAGATCCCAACTTTCATTTGGATCCAGAAAAGCCATTTTACGCTTATAAAACTTT
                      ____________________________________________________________
consensus             CAGAATAGATCCCAACTTTCATTTGGATCCAGAAAAGCCATTTTACGCTTATAAAACTTT