Contig 009087:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS116H02Sequence573009087 (3)ref|XP_010095584.1|1e-15Probably inactive leucine-rich repeat receptor-like protein kinase [Morus notab
JMSF027F24Sequence658009087 (3)gb|KDP45204.1|9e-57hypothetical protein JCGZ_15069 [Jatropha curcas]717011338 (2)ref|XP_004242451.1|4e-102PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A
JMSF029K15Sequence659009087 (3)gb|KDP45204.1|8e-57hypothetical protein JCGZ_15069 [Jatropha curcas]766011338 (2)ref|XP_006366814.1|3e-120PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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JMSF027F24+                                   AACATTCAGGTATGTGCAATTCGCAAGTTCCAGAGG
JMSF029K15+                                  GAACATTCAGGTATGTGCAATTCGCAAGTTCCAGAGG
                      ____________________________________________________________
consensus                                    GAACATTCAGGTATGTGCAATTCGCAAGTTCCAGAGG
 
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JMSF027F24+           GATCTCTCCCGAAAATCTGTTGGAGGAGAGATCAAGGGTAGTCAAAAAACCGACGATTTT
JMSF029K15+           GATCTCTCCCGAAAATCTGTTGGAGGAGAGATCAAGGGTAGTCAAAAAACCGACGATTTT
                      ____________________________________________________________
consensus             GATCTCTCCCGAAAATCTGTTGGAGGAGAGATCAAGGGTAGTCAAAAAACCGACGATTTT
 
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JMSF027F24+           GGAGATGTTAGCCGGAATAGACCCATTGACCTTATTGCTCGAAAGATCTAACCCTGTCAT
JMSF029K15+           GGAGATGTTAGCCGGAATAGACCCATTGATCTTATTGCTCGAAAGATCTAACCCTGTCAT
                      ____________________________________________________________
consensus             GGAGATGTTAGCCGGAATAGACCCATTGATCTTATTGCTCGAAAGATCTAACCCTGTCAT
 
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JMSF027F24+           AGCTTCACACATACGAAGACCAAGCGGAAACCTTCCCCCGAGCTCCATGTTTGAAAGCCG
JMSF029K15+           AGCTTCACACATACGAAGACCAAGCGGAAACCTTCCCCCGAGCTCCATGTTTGAAAGCCG
                      ____________________________________________________________
consensus             AGCTTCACACATACGAAGACCAAGCGGAAACCTTCCCCCGAGCTCCATGTTTGAAAGCCG
 
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JMSF027F24+           GATATTCAAAACCTTATTCTCATCGGGATGCCAGCAGTCAACCCCAATAAATCTACAGAT
JMSF029K15+           GATATTCAAAACCTTATTCTCATCGGGATGCCAGCAGTCAACCCCAATAAATCTACAGAT
JMFS116H02+                                      ATGCCAGCAGTCAACCCCAATAAATCTACAGAT
                      ____________________________________________________________
consensus             GATATTCAAAACCTTATTCTCATCGGGATGCCAGCAGTCAACCCCAATAAATCTACAGAT
 
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JMSF027F24+           GAAACCTTCGGTATTATTATTAAAATTCCAAGAATCTAAGTAACCAAGAGGATCTTCCAA
JMSF029K15+           GAAACCTTCGGTATTATTATTAAAATTCCAAGAATCTAAGTAACCAAGAGGATCTTCCAA
JMFS116H02+           GAAACCTTCGGTATTATTATTAAAATTCCAAGAATCTAAGTAACCAAGAGGATCTTCCAA
                      ____________________________________________________________
consensus             GAAACCTTCGGTATTATTATTAAAATTCCAAGAATCTAAGTAACCAAGAGGATCTTCCAA
 
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JMSF027F24+           AGACTTCTTTACAGATTTTAGACAGTCAATGTCACTCTGAAGACAATAACAAAGACTGCT
JMSF029K15+           AGACTTCTTTACAGATTTTAGACAGTCAATGTCACTCTGAAGACAATAACAAAGACTGCT
JMFS116H02+           AGACTTCTTTACAGATTTTAGACAGTCAATGTCACTCTGAAGACAATAACAAAGACTGCT
                      ____________________________________________________________
consensus             AGACTTCTTTACAGATTTTAGACAGTCAATGTCACTCTGAAGACAATAACAAAGACTGCT
 
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JMSF027F24+           ACTCAATAAAAAGCAGCCAAAGATAGATGCGATAACCGGTCTGTAATTCAACGCCATGCT
JMSF029K15+           ACTCAATAAAAAGCAGCCAAAGATAGATGCGATAACCGGTCTGTAATTCAACGCCATGCT
JMFS116H02+           ACTCAATAAAAAGCAGCCAAAGATAGATGCGATAACCGGTCTGTAATTCAACGCCATGCT
                      ____________________________________________________________
consensus             ACTCAATAAAAAGCAGCCAAAGATAGATGCGATAACCGGTCTGTAATTCAACGCCATGCT
 
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JMSF027F24+           CGCTACTACAACGACCTAAATGACAATAACTTTCTTCAATTGCTAACTGGTATGTTCGGC
JMSF029K15+           CGCTACTACAACGACCTAAATGACAATAACTTTCTTCAATTGCTAACTGGTATGTTCGGC
JMFS116H02+           CGCTACTACAACGACCTAAATGACAATAACTTTCTTCAATTGCTAACTGGTATGTTCGGC
                      ____________________________________________________________
consensus             CGCTACTACAACGACCTAAATGACAATAACTTTCTTCAATTGCTAACTGGTATGTTCGGC
 
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JMSF027F24+           ATCTTTACAAACTAGTACGTGAACCTCCAACCTCCAACATCATAAATCAACGACAAAATA
JMSF029K15+           ATCTTTACAAACTAGTACGTGAACCTCCAACCTCCAACATCATAAATCAACGACAAAATA
JMFS116H02+           ATCTTTACAAACTAGTACGTGAACCTCCAACCTCCAACATCATAAATCAACGACAAAATA
                      ____________________________________________________________
consensus             ATCTTTACAAACTAGTACGTGAACCTCCAACCTCCAACATCATAAATCAACGACAAAATA
 
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JMSF027F24+           TATTCCCATTTGCAAGAACAAGACAAACAACTGTGTGATGAGAGGTAGATCTTCTTCAAG
JMSF029K15+           TATTCCCATTTGCAAGAACAAGACAAACAACTGTGTGATGAGAGGTAGATCTTCTTCAAG
JMFS116H02+           TATTCCCATTTGCAAGAACAAGACAAACAACTGTGTGATGAGAGGTAGATCTTCTTCAAG
                      ____________________________________________________________
consensus             TATTCCCATTTGCAAGAACAAGACAAACAACTGTGTGATGAGAGGTAGATCTTCTTCAAG
 
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JMSF027F24+           GGTTGCAGAAATTAGAGAGCT                                       
JMSF029K15+           GGTTGCAGAAATTAGAGAGCT                                       
JMFS116H02+           GGTTGCAGAAATTAGAGAGCTGAGAACCCACTGAGAAGGATATTGGTTATATGGGTTGTA
                      ____________________________________________________________
consensus             GGTTGCAGAAATTAGAGAGCTGAGAACCCACTGAGAAGGATATTGGTTATATGGGTTGTA
 
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JMFS116H02+           CCGGTCAAAGAAGGAACGCTCGTTTTTCTCTTGCCCTGGGCTCACTGTAACAGCGAGAGG
                      ____________________________________________________________
consensus             CCGGTCAAAGAAGGAACGCTCGTTTTTCTCTTGCCCTGGGCTCACTGTAACAGCGAGAGG
 
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JMFS116H02+           GGGAGAGAGAGAAACAGAGAGAGAGAAGACTGAAGACTTGGGCAACGACTCGGAGCTTGA
                      ____________________________________________________________
consensus             GGGAGAGAGAGAAACAGAGAGAGAGAAGACTGAAGACTTGGGCAACGACTCGGAGCTTGA