Contig 009086:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS139A01+                                                  GATGCAAAAGTTCATAGCCTT
                      ____________________________________________________________
consensus                                                    GATGCAAAAGTTCATAGCCTT
 
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JMFS139A01+           GCTTGAAGTAACGAAGGTGGGCATCCATCGTGCCACTAACTGCTTCCAAGAATTCAAACC
                      ____________________________________________________________
consensus             GCTTGAAGTAACGAAGGTGGGCATCCATCGTGCCACTAACTGCTTCCAAGAATTCAAACC
 
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JMFS139A01+           TTTTCTTTGCTTCAACATTTGAAAGAGCAGTAACCAAACTGAACCTTGCTTGTTCAAAGG
                      ____________________________________________________________
consensus             TTTTCTTTGCTTCAACATTTGAAAGAGCAGTAACCAAACTGAACCTTGCTTGTTCAAAGG
 
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JMFS139A01+           CTGACCTTGCATTATGAAGTTCCTCCTCTAGCATGCTCGCTACGTCACTCTTCGTGCCTT
JMFS036H12+                                                                   CCTT
                      ____________________________________________________________
consensus             CTGACCTTGCATTATGAAGTTCCTCCTCTAGCATGCTCGCTACGTCACTCTTCGTGCCTT
 
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JMFS139A01+           TCCTTAGTGACAAAAACTTATCACGTGCCTGATCGTATAAAAGGCTAGCCTTGTCAAAGC
JMFS036H12+           TCCTTAGTGACAAAAACTTATCACGTGCCTGATCGTATAAAAGGCTAGCCTTGTCAAAGC
                      ____________________________________________________________
consensus             TCCTTAGTGACAAAAACTTATCACGTGCCTGATCGTATAAAAGGCTAGCCTTGTCAAAGC
 
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JMFS139A01+           GCTTTCGAGCTTCCTTGACCTCTAGCAAATCTATGTTAACAAAATGCAGCAATCGATCGT
JMFS150A08+                     TTCCTTGACCTCTAGCAAATCTATGTTAACAAAATGCAGCAATCGATCGT
JMFS036H12+           GCTTTCGAGCTTCCTTGACCTCTAGCAAATCTATGTTAACAAAATGCAGCAATCGATCGT
                      ____________________________________________________________
consensus             GCTTTCGAGCTTCCTTGACCTCTAGCAAATCTATGTTAACAAAATGCAGCAATCGATCGT
 
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JMFS139A01+           TCAGCAAGTGCTCAACCTGAGACCTAAGAACTTCCTTGTATGTCCCAATTTCCCTCAGTG
JMFS150A08+           TCAGCAAGTGCTCAACCTGAGACCTAAGAACTTCCTTGTATGTCCCAATTTCCCTCAGTG
JMFS036H12+           TCAGCAAGTGCTCAACCTGAGACCTAAGAACTTCCTTGTATGTCCCAATTTCCCTCAGTG
                      ____________________________________________________________
consensus             TCAGCAAGTGCTCAACCTGAGACCTAAGAACTTCCTTGTATGTCCCAATTTCCCTCAGTG
 
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JMFS139A01+           CAATAGTGAATTTAGTCATAACAGGACCTCCAAAAGCAACACTAATGGGGTCATTGTGCC
JMFS150A08+           CAATAGTGAATTTAGTCATAACAGGACCTCCAAAAGCAACACTAATGGGGTCATTGTGCC
JMFS036H12+           CAATAGTGAATTTAGTCATAACAGGACCTCCAAAAGCAACACTAATGGGGTCATTGTGCC
                      ____________________________________________________________
consensus             CAATAGTGAATTTAGTCATAACAGGACCTCCAAAAGCAACACTAATGGGGTCATTGTGCC
 
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JMFS139A01+           CCCCGCCAAAGGTTTCCAGAGAACTTGCAAAAGCAATGTCTCCATCATATCCCTCTCCAA
JMFS150A08+           CCCCGCCAAAGGTTTCCAGAGAACTTGCAAAAGCAATGTCTCCATCATATCCCTCTCCAA
JMFS036H12+           CCCCGCCAAAGGTTTCCAGAGAACTTGCAAAAGCAATGTCTCCATCATATCCCTCTCCAA
JMFS115H06+                                                   TCCATCATATCCCTCTCCAA
                      ____________________________________________________________
consensus             CCCCGCCAAAGGTTTCCAGAGAACTTGCAAAAGCAATGTCTCCATCATATCCCTCTCCAA
 
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JMFS139A01+           GCCC-TTCCGTATATTTTCGACATCCTTTGTAAAACTTCAAACTTCTCTCTCTCAAAGTT
JMFS150A08+           GCCC-TTCCGTATATTTTCGACATCCTTTGTAAAACTTCAAACTTCTCTCTCTCAAAGTT
JMFS036H12+           GCCC-TTCCGTATATTTTCGACATCCTTTGTAAAACTTCAAACTTCTCTCTCTCAAAGTT
JMFS115H06+           GCCCTTTCCGTATATTTTCGACATCCTTTGTAAAACTTCAAACTTCTCTATCTCAAAGTT
                      ____________________________________________________________
consensus             GCCC-TTCCGTATATTTTCGACATCCTTTGTAAAACTTCAAACTTCTCTCTCTCAAAGTT
 
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JMFS139A01+           TCAGCACTTTCCTCCAAACTTTGCAGCTGCTTACGGAACATAGGAGAGTCATCGAGCTTA
JMFS150A08+           TCAGCACTTTCCTCCAAACTTTGCAGCTGCTTACGGAACATAGGAGAGTCATCGAGCTTA
JMFS036H12+           TCAGCACTTTCCTCCAAACTTTGCAGCTGCTTACGGAACATAGGAGAGTCATCGAGCTTA
JMFS115H06+           TCAGCACTTTCCTCCAAACTTTGCAGCTGCTTACGGAACATAGGAGAGTCATCGAGCTTA
                      ____________________________________________________________
consensus             TCAGCACTTTCCTCCAAACTTTGCAGCTGCTTACGGAACATAGGAGAGTCATCGAGCTTA
 
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JMFS139A01+           GCAAAAG                                                     
JMFS150A08+           GCAAAAGGCATGTTTGCAAGACTGATTTAAGGCCCTTCCTGTATGCAACAACTCTCAATT
JMFS036H12+           GCAAAAGGCATGTTTGCAAGACTGATTTAAGGCCCTTCCTGTATGCAACAACTCTCAATT
JMFS115H06+           GCAAAAGGCATGTTTGCAAGACTGATTTAAGGCCCTTCCTGTATGCAACAACTCTCAATT
                      ____________________________________________________________
consensus             GCAAAAGGCATGTTTGCAAGACTGATTTAAGGCCCTTCCTGTATGCAACAACTCTCAATT
 
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JMFS150A08+           AACATCCCAAACTCCAACCTCCTATCTCAATGCCGCACTAAGATCTATCATCTTTCTCCC
JMFS036H12+           AACATCCCAAACTCCAACCTCCTATCTCAATGCCGCACTAAGATCTATCATCTTTCTCCC
JMFS115H06+           AACATCCCAAACTCCAACCTCCTATCTCAATGCCGCACTAAGATCTATCATCTTTCTCCC
                      ____________________________________________________________
consensus             AACATCCCAAACTCCAACCTCCTATCTCAATGCCGCACTAAGATCTATCATCTTTCTCCC
 
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JMFS150A08+           CGATCTTCCAACACATCCAGCCCAGACCCGCCCTTTCTCAACCACCGCGAATTACA    
JMFS036H12+           CGATCTTCCAACACATCCAGCCCAGACCCGCCCTTTCTCAACCACCGCGAATTACA    
JMFS115H06+           CGATCTTCCAACACATCCAGCCCAGACCCGCCCTTTCTCAACCACCGCGAATTACACTGA
                      ____________________________________________________________
consensus             CGATCTTCCAACACATCCAGCCCAGACCCGCCCTTTCTCAACCACCGCGAATTACACTGA
 
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JMFS115H06+           ATTATTTATTTATTTTTTTAAGAAAAAAAGAAAAAAACAGGCGAATAAATTAGCTAAAAT
                      ____________________________________________________________
consensus             ATTATTTATTTATTTTTTTAAGAAAAAAAGAAAAAAACAGGCGAATAAATTAGCTAAAAT
 
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JMFS115H06+           TCTCTGGAGAGGATAAAAGTGAGCGGAGATTTAGCTGGTACAAAACCCTAGAAGCATAAA
                      ____________________________________________________________
consensus             TCTCTGGAGAGGATAAAAGTGAGCGGAGATTTAGCTGGTACAAAACCCTAGAAGCATAAA
 
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JMFS115H06+           GTGGGAGAGAAACCCTAAGAAAATCTCGGGAATTGAATCAATGTTTTGTTCAACCTCTTC
                      ____________________________________________________________
consensus             GTGGGAGAGAAACCCTAAGAAAATCTCGGGAATTGAATCAATGTTTTGTTCAACCTCTTC
 
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JMFS115H06+           GATTTAACTCTAGGTATTACTGTTACACTGTAAGTTTGCAAGCTTCAACTATCAAAACAG
                      ____________________________________________________________
consensus             GATTTAACTCTAGGTATTACTGTTACACTGTAAGTTTGCAAGCTTCAACTATCAAAACAG
 
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JMFS115H06+           TGCAGAGTAGTTCTGCAGCTGAAAGTGTAAAACCATGTGTGTAGTGTAGTGCTGTGTAGA
                      ____________________________________________________________
consensus             TGCAGAGTAGTTCTGCAGCTGAAAGTGTAAAACCATGTGTGTAGTGTAGTGCTGTGTAGA