Contig 009085:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS004D05Sequence282009085 (3)ref|XP_009611996.1|2e-29PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Nicotiana tomentosiformis]
JMFS114F11Sequence573009085 (3)ref|XP_009760667.1|4e-38PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Nicotiana sylvestris]
JMFS117E05Sequence611009085 (3)ref|XP_009760667.1|1e-62PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS004D05+                                                               AACTGTAA
JMFS117E05+           TTTGCTTATCCTAACTCCCAAGGAGCTGCCTTCTTGCAAACCAGAAAGTCTCAACTGTAA
                      ____________________________________________________________
consensus             TTTGCTTATCCTAACTCCCAAGGAGCTGCCTTCTTGCAAACCAGAAAGTCTCAACTGTAA
 
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JMFS004D05+           GGGATAAACATCTGTAATATCATCATCTGAGGTTGAAAAGCTTGTGGTATTCTTTGCTGG
JMFS117E05+           GGGATAAACATCTGTAATATCATCATCTGAGGTTGAAAAGCTTTTGCTATTCTTTGCTGG
JMFS114F11+                                      TGAGGTTGAAAAGCTTNTGCTATTCTTTGCTGG
                      ____________________________________________________________
consensus             GGGATAAACATCTGTAATATCATCATCTGAGGTTGAAAAGCTTTTGCTATTCTTTGCTGG
 
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JMFS004D05+           AGTTTTAGAACCACTGTGCCACTTGAGTGCCTGAATCCACATGTCACCAGGGACCAAGGC
JMFS117E05+           AGTTTTAGAACCACTGTGCCACTTGAGTGCCTGAATCCACATGTCACCAGGGACCAAGGC
JMFS114F11+           AGTTTTAGAACCACTGTGCCACTTGAGTGCCTGAATCCACATGTCACCAGGGACCAAGGC
                      ____________________________________________________________
consensus             AGTTTTAGAACCACTGTGCCACTTGAGTGCCTGAATCCACATGTCACCAGGGACCAAGGC
 
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JMFS004D05+           AAAATCACGACCTGATGCCCCAACTTCGCCATTGTCACAGGTATGCAGTGAAGGATCATC
JMFS117E05+           AAAATCACGACCTGATACCCCAACTTCGCCATTGTCACAGGTCTGCAGTGAAGGATCATC
JMFS114F11+           AAAATCACGACCTGATACCCCAACTTCGCCATTGTCACAGGTCTGCAGTGAAGGATCATC
                      ____________________________________________________________
consensus             AAAATCACGACCTGATACCCCAACTTCGCCATTGTCACAGGTCTGCAGTGAAGGATCATC
 
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JMFS004D05+           CTCCTTCCTTAAATTAAAAGCAACATCTGAACTGAAAATATTGTTTATTATCTTCATTGG
JMFS117E05+           CTCCTTCCTTAAATTAAAAGCAACATCTGAACTGAAAATATTGTTTATTATCTTCATTGG
JMFS114F11+           CTCCTTCCTTAAATTAAAAGCAACATCTGAACTGAAAATATTGTTTATTATCTTCATTGG
                      ____________________________________________________________
consensus             CTCCTTCCTTAAATTAAAAGCAACATCTGAACTGAAAATATTGTTTATTATCTTCATTGG
 
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JMFS004D05+           CCCTCCATGAGCAGGTGAGGCTGTGTACAAAGTC                          
JMFS117E05+           CCCTCCATGAGCAGGTGAGGCTGTGTACAAAGTCCCCTTCTTCCCATCTGCTGATGCTGT
JMFS114F11+           CCCTCCATGAGCAGGTGAGGCTGTGTACAAAGTCCCCTTCTTCCCATCTGCTGATGCTGT
                      ____________________________________________________________
consensus             CCCTCCATGAGCAGGTGAGGCTGTGTACAAAGTCCCCTTCTTCCCATCTGCTGATGCTGT
 
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JMFS117E05+           GTCTTGTGCCTCTTTCCACCACCT                                    
JMFS114F11+           GTCTTGTGCCTCTTTCCACCACCTACAATGCACAAACTTTCAAGCTGTGGCCTTTGAGAG
                      ____________________________________________________________
consensus             GTCTTGTGCCTCTTTCCACCACCTACAATGCACAAACTTTCAAGCTGTGGCCTTTGAGAG
 
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JMFS114F11+           TACTTAATTCTAACACTTTGTGATCATTGCTTCCTTGGAGAAGCAGACGGATATGAAAAT
                      ____________________________________________________________
consensus             TACTTAATTCTAACACTTTGTGATCATTGCTTCCTTGGAGAAGCAGACGGATATGAAAAT
 
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JMFS114F11+           TGTACTAAGAGTATGATGAGAAAGATGCTCTTTTGCTCCTTCACAACTCTACCTACAAGC
                      ____________________________________________________________
consensus             TGTACTAAGAGTATGATGAGAAAGATGCTCTTTTGCTCCTTCACAACTCTACCTACAAGC
 
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JMFS114F11+           CATACTAGAGATGAATACACACAGATACCCCTACTCCCTATATATGTATTTCTCAGAACA
                      ____________________________________________________________
consensus             CATACTAGAGATGAATACACACAGATACCCCTACTCCCTATATATGTATTTCTCAGAACA
 
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JMFS114F11+           AAAATCGGTATCAGAACAATATTCCAACAACAGACATCATCAACTAGATTGTCACACAAG
                      ____________________________________________________________
consensus             AAAATCGGTATCAGAACAATATTCCAACAACAGACATCATCAACTAGATTGTCACACAAG