Contig 009079:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS041E09Sequence621009079 (2)ref|XP_009770560.1|168PREDICTED: uncharacterized protein LOC104221239 [Nicotiana sylvestris]
JMFS109G06Sequence605009079 (2)ref|XP_009373901.1|8e-37PREDICTED: protein translocase subunit SECA2, chloroplastic-like isoform X3 [Py

Alignment

This contig is upended


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JMFS041E09+                         AATTCATTCTTTACCCCCTCTGCCATCCCATATAATACTCTCAACA
JMFS109G06+                                                                 TCAACA
                      ____________________________________________________________
consensus                           AATTCATTCTTTACCCCCTCTGCCATCCCATATAATACTCTCAACA
 
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JMFS041E09+           CTTTCACTTCATAACTATACTTAAACTTAGAACAGCTCTCGTTTTTGTCAATAAAGATCC
JMFS109G06+           CTTTCACTTCATAACTATACTT-AACTTAGAACAGCTCTCGTTTTTGTCAATAAAGATCC
                      ____________________________________________________________
consensus             CTTTCACTTCATAACTATACTTAAACTTAGAACAGCTCTCGTTTTTGTCAATAAAGATCC
 
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JMFS041E09+           CAACTTTAACCAGACATACTTCCTCTTTCTCTACGGAACATCTATTGCTCCTACTATCAT
JMFS109G06+           CAACTTTAACCAGACATACTTCCTCTTTCTCTACGGAACATCTATTGCTCCTACTATCAT
                      ____________________________________________________________
consensus             CAACTTTAACCAGACATACTTCCTCTTTCTCTACGGAACATCTATTGCTCCTACTATCAT
 
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JMFS041E09+           GATTTCTCAAACACCCATACAACAAATAACAGAAATCATCGGGACTTTTAGTACCAGAAT
JMFS109G06+           GATTTCTCAAACACCCATACAACAAATAACAGAAATCATCGGGACTTTTAGTACCAGAAT
                      ____________________________________________________________
consensus             GATTTCTCAAACACCCATACAACAAATAACAGAAATCATCGGGACTTTTAGTACCAGAAT
 
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JMFS041E09+           TTCGTGGTTCAGTGGATAAGCTGTTCTCTGGGAGAAGCCATGGCTTCCAATACAAGTAGA
JMFS109G06+           TTCGTGGTTCAGTGGATAAGCTGTTCTCTGGGAGAAGCCATGGCTTCCAATACAAGTAGA
                      ____________________________________________________________
consensus             TTCGTGGTTCAGTGGATAAGCTGTTCTCTGGGAGAAGCCATGGCTTCCAATACAAGTAGA
 
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JMFS041E09+           ATTCACGAGACCACAAAACGGGTAGGAAAACTGCGGAGTCCTTTTCGGGTTCCCGCAGCG
JMFS109G06+           ATTCACGAGACCACAAAACGGGTAGGAAAACTGCGGAGTCCTTTTCGGGTTCCCGCAGCG
                      ____________________________________________________________
consensus             ATTCACGAGACCACAAAACGGGTAGGAAAACTGCGGAGTCCTTTTCGGGTTCCCGCAGCG
 
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JMFS041E09+           AATTTGCGGTATTGGGTGGTGGAGAGTTGTGGTTGTGGAGGAGGGAGGAGAGGCGGAGGA
JMFS109G06+           AATTTGCGGTATTGGGTGGTGGAGAGTTGTGGTTGTGGAGGAGGGAGGAGAGGCGGAGGA
                      ____________________________________________________________
consensus             AATTTGCGGTATTGGGTGGTGGAGAGTTGTGGTTGTGGAGGAGGGAGGAGAGGCGGAGGA
 
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JMFS041E09+           GGTCGATGTTCTTGGGGAGAGAGGAGAGGGGTTTGGGTAGCTTCACAAGCTGAGTACAGG
JMFS109G06+           GGTCGATGTTCTTGGGGAGAGAGGAGAGGGGTTTGGGTAGCTTCACAAGCTGAGTACAGG
                      ____________________________________________________________
consensus             GGTCGATGTTCTTGGGGAGAGAGGAGAGGGGTTTGGGTAGCTTCACAAGCTGAGTACAGG
 
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JMFS041E09+           CGGGGCAGCGGATGGTGTGAGGGAAGGCGTTTGGGAGCTGGGCGAGACAGGGCTCGCAGG
JMFS109G06+           CGGGGCAGCGGATGGTGTGAGGGAAGGCGTTTGGGAGCTGGGCGAGACAGGGCTCGCAGG
                      ____________________________________________________________
consensus             CGGGGCAGCGGATGGTGTGAGGGAAGGCGTTTGGGAGCTGGGCGAGACAGGGCTCGCAGG
 
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JMFS041E09+           CAGAGTGGCCACAGGCGAGTACACGCGGGATCGTTGCAACGGAGTCGTACACTTGCAGAC
JMFS109G06+           CAGAGTGGCCACAGGCGAGTACACGCGGGATCGTTGCAACGGAGTCGTACACTTGCAGAC
                      ____________________________________________________________
consensus             CAGAGTGGCCACAGGCGAGTACACGCGGGATCGTTGCAACGGAGTCGTACACTTGCAGAC
 
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JMFS041E09+           AGACCGGGCACTCCGGTGGTTCCGGATGCTCCATT                         
JMFS109G06+           AGACCGGGCACTCCGGTGGTTCCGGATGCTCCATTGCCGGTGAATCAAACTATCATCATA
                      ____________________________________________________________
consensus             AGACCGGGCACTCCGGTGGTTCCGGATGCTCCATTGCCGGTGAATCAAACTATCATCATA